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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002442000
- symbol?: tspA
- synonym:
- description?: transposase
- transposase
- Phage protein
- transposase family protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2959608..2961036
- synteny block?: BlockID0016800
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0573
08BA02176:
C248_0673
11819-97:
MS7_0647
6850:
RSAU_000548
71193:
ST398NM01_0670
ECT-R 2:
ECTR2_549
ED133:
SAOV_0631
ED98:
SAAV_0560
HO 5096 0412:
SAEMRSA15_05240
JH1:
SaurJH1_0634
JH9:
SaurJH9_0619
JKD6008:
SAA6008_00603
JKD6159:
SAA6159_00549
LGA251:
SARLGA251_05310
M013:
M013TW_0583
MRSA252:
SAR0602
MSHR1132:
SAMSHR1132_05400
MSSA476:
SAS0555
Mu3:
SAHV_0594
Mu50:
SAV0596
MW2:
MW0551
RF122:
SAB0546
ST398:
SAPIG0670
T0131:
SAT0131_00660
TCH60:
HMPREF0772_12591
TW20:
SATW20_06650
USA300_TCH1516:
USA300HOU_0591
VC40:
SAVC_02565
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MSIDMYLDRSRNQASSVGNLSQTMNSNYDALEKAITQFINDDALKGKAYTSAKQFFSTVL
N315 MSIDMYLDRSRNQASSVGNLSQTMNSNYDALEKAITQFINDDALKGKAYTSAKQFFSTVL
NCTC8325 MSIDMYLDRSRNQASSVGNLSQTMNSNYDALEKAITQFINDDALKGKAYTSAKQFFSTVL
Newman MSIDMYLDRSRNQASSVGNLSQTMNSNYDALEKAITQFINDDALKGKAYTSAKQFFSTVL
USA300_FPR3757 MSIDMYLDRSRNQASSVGNLSQTMNSNYDALEKAITQFINDDALKGKAYTSAKQFFSTVL
************************************************************
COL IPLSTSMKTLSDLTKQACDNFVSRYTSEVDSISLKESELEEDIRSLSQQITRYENLNNNL
N315 IPLSTSMKTLSDLTKQACDNFVSRYTSEVDSISLKESELEEDIRSLSQQITRYENLTNNL
NCTC8325 IPLSTSMKTLSDLTKQACDNFVSRYTSEVDSISLKESELEEDIRSLSQQITRYENLNNNL
Newman IPLSTSMKTLSDLTKQACDNFVSRYTSEVDSISLKESELEEDIRSLSQQITRYENLNNNL
USA300_FPR3757 IPLSTSMKTLSDLTKQACDNFVSRYTSEVDSISLKESELEEDIRSLSQQITRYENLNNNL
********************************************************.***
COL KKHASDNQQAISSNQQIIRTLGQQKHELEEKLRKLREFNQKSPEIFKEVEEFQKIVQQGL
N315 KKHASDNQQAISSNQQIIQTLGQQKHELEEKLRKLREFNQKSPEIFKEVEEFQKIVQQGL
NCTC8325 KKHASDNQQAISSNQQIIRTLGQQKHELEEKLRKLREFNQKSPEIFKEVEEFQKIVQQGL
Newman KKHASDNQQAISSNQQIIRTLGQQKHELEEKLRKLREFNQKSPEIFKEVEEFQKIVQQGL
USA300_FPR3757 KKHASDNQQAISSNQQIIRTLGQQKHELEEKLRKLREFNQKSPEIFKEVEEFQKIVQQGL
******************:*****************************************
COL TQAQNFWNFSTNQFNIPSGKELDWAKASHEKYLKVAMGKIEHKAEKETLNKADFAVIKAY
N315 TQAQNFWNFSTNQFNIPSGKELDWAKASHEKYLKVAMGKIEHKAEKETLNKADFAVIKAY
NCTC8325 TQAQNFWNFSTNQFNIPSGKELDWAKASHEKYLKVAMGKIEHKAEKETLNKADFAVIKAY
Newman TQAQNFWNFSTNQFNIPSGKELDWAKASHEKYLKVAMGKIEHKAEKETLNKADFAVIKAY
USA300_FPR3757 TQAQNFWNFSTNQFNIPSGKELDWAKASHEKYLKVAMGKIEHKAEKETLNKADFAVIKAY
************************************************************
COL AKEHPEDDIPKSILKYINDNKDSIKRDIGLDITSTLLEQGGINASKFGVFINTAGGVKGP
N315 AKEHPEDDIPKSIMKYINDNKDSIKRDIGLDITSTLLEQGGINASKFGVFINTAGGVKGP
NCTC8325 AKEHPEDDIPKSILKYINDNKDSIKRDIGLDITSTLLEQDGINASKFGVFINTAGGVKGP
Newman AKEHPEDDIPKSILKYINDNKDSIKRDIGLDITSTLLEQGGINASKFGVFINTAGGVKGP
USA300_FPR3757 AKEHPEDDIPKSILKYINDNKDSIKRDIGLDITSTLLEQGGINASKFGVFINTAGGVKGP
*************:*************************.********************
COL AGPNSFVEVKRTSGNVFIENGSKFAKGGKYLGKGVAGVGFGIGMYDDLANDDKTFGEALS
N315 AGPNSFVEVKRTSGNVFIENGSKFAKGGKYLGKGVAGVGFGIGMYDDLANDNKTFGEALS
NCTC8325 AGPNSFVEVKRTSGNVFIENGSKFAKGGKYLGKGVAGVGFGIGMYDDLANDDKTFGEALS
Newman AGPNSFVEVKRTSGNVFIENGSKFAKGGKYLGKGVAGVGFGIGMYDDLANDDKTFGEALS
USA300_FPR3757 AGPNSFVEVKRTSGNVFIENGSKFAKGGKYLGKGVAGVGFGIGMYDDLANDDKTFGEALS
***************************************************:********
COL HNGMTLAAGSAGTAVGAGLATFVLGSNPVGWVILAGLAMSTVFALGTDLIYQNNIFGLKD
N315 HNGMTLAAGSV-----AAFGVAALVSNPVGWAVVGILTAGIIGSTVSDYLYQNNYFGIKD
NCTC8325 HNGMTLAAGSAGTAVGAGLATFVLGSNPVGWVILAGLAMSTVFALGTDLIYQNNIFGLKD
Newman HNGMTLAAGSAGTAVGAGLATFVLGSNPVGWVILAGLAMSTVFALGTDLIYQNNIFGLKD
USA300_FPR3757 HNGMTLAAGSAGTAVGAGLATFVLGSNPVGWVILAGLAMSTVFALGTDLIYQNNIFGLKD
**********. *.:.. .* ******.::. *: . : : :* :**** **:**
COL KVDWVGHKIDNSIDVVKKTTEKSMDSVGNAVSEAKNIISNHINPMKWAW
N315 KVDWAGHKIDEGIDAVNKTAEKAVDSVGNAIGDATKSISNHINPMKWSW
NCTC8325 KVDWVGHKIDNSIDVVKKTTEKSMDSVGNAVSEAKNIISNHINPMKWAW
Newman KVDWVGHKIDNSIDVVKKTTEKSMDSVGNAVSEAKNIISNHINPMKWAW
USA300_FPR3757 KVDWVGHKIDNSIDVVKKTTEKSMDSVGNAVSEAKNIISNHINPMKWAW
****.*****:.**.*:**:**::******:.:*.: **********:*