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NCBI: 26-AUG-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA0553 [new locus tag: SA_RS03200 ]
- pan locus tag?: SAUPAN002442000
- symbol: SA0553
- pan gene symbol?: tspA
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA0553 [new locus tag: SA_RS03200 ]
- symbol: SA0553
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 646693..648087
- length: 1395
- essential: no DEG other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 1123359 NCBI
- RefSeq: NP_373807 NCBI
- BioCyc: see SA_RS03200
- MicrobesOnline: 102833 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1381ATGAGTATTGACATGTATTTAGACAGATCTCGAAACCAAGCTTCAAGTGTGGGGAATTTG
AGTCAAACAATGAATTCAAATTATGATGCGTTGGAAAAAGCAATTACTCAATTTATCAAT
GATGATGCGCTTAAAGGGAAAGCGTATACGTCAGCTAAGCAATTTTTTAGTACGGTGTTA
ATTCCATTATCAACAAGTATGAAAACATTGAGTGATTTAACGAAGCAAGCTTGCGATAAT
TTTGTGTCACGTTATACGAGTGAGGTTGATAGCATATCTTTAAAAGAATCAGAGCTTGAA
GAAGATATCAGATCATTAAGTCAACAAATTACGCGATATGAAAATTTAACTAACAATTTG
AAAAAGCATGCTTCCGATAATCAGCAAGCCATTTCATCGAACCAACAAATAATACAAACA
TTAGGTCAACAAAAACATGAATTAGAAGAGAAACTACGTAAATTACGTGAGTTTAATCAA
AAATCACCAGAAATATTTAAAGAAGTTGAAGAATTTCAAAAAATTGTCCAACAAGGACTT
ACCCAAGCGCAGAATTTTTGGAACTTTTCAACAAATCAATTTAATATACCTTCAGGTAAA
GAACTTGATTGGGCTAAAGCAAGTCATGAAAAATATTTGAAAGTTGCTATGGGGAAAATT
GAACATAAAGCAGAGAAAGAAACTTTAAATAAAGCAGACTTTGCTGTTATAAAGGCATAT
GCCAAAGAACATCCAGAAGACGATATCCCGAAAAGTATAATGAAATATATAAATGACAAT
AAAGATAGTATTAAACGAGATATAGGATTAGATATTACGTCAACACTTTTAGAGCAAGGC
GGTATAAATGCAAGTAAATTCGGTGTATTTATCAATACAGCAGGTGGAGTGAAAGGCCCA
GCCGGTCCAAATTCATTTGTGGAAGTCAAACGTACATCAGGTAATGTGTTTATAGAAAAT
GGTAGTAAATTTGCAAAAGGCGGAAAATATCTAGGGAAAGGTGTTGCAGGTGTAGGATTT
GGTATAGGTATGTATGATGATCTTGCAAATGATAATAAAACATTTGGAGAGGCATTGTCG
CATAATGGTATGACGCTTGCAGCTGGATCTGTTGCAGCATTTGGTGTAGCGGCTTTAGTA
AGTAATCCAGTCGGTTGGGCTGTGGTAGGTATTTTAACAGCAGGTATTATTGGATCTACT
GTTTCTGATTATCTTTATCAAAATAATTATTTTGGCATAAAAGATAAAGTGGACTGGGCA
GGACATAAAATAGACGAGGGTATTGATGCTGTAAACAAAACTGCAGAAAAAGCTGTAGAT
AGTGTTGGTAATGCCATTGGTGATGCCACAAAAAGTATTAGTAATCATATTAATCCTATG
AAATGGAGTTGGTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA0553 [new locus tag: SA_RS03200 ]
- symbol: SA0553
- description: hypothetical protein
- length: 464
- theoretical pI: 6.73714
- theoretical MW: 50976.9
- GRAVY: -0.449353
⊟Function[edit | edit source]
- TIGRFAM: Cellular processes Cell division chromosome segregation protein SMC (TIGR02168; HMM-score: 14.5)DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02168; HMM-score: 14.5)SH3 domain protein (TIGR04211; HMM-score: 14.4)Cellular processes Cell division chromosome segregation protein SMC (TIGR02169; HMM-score: 13.7)DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02169; HMM-score: 13.7)two transmembrane protein (TIGR04527; HMM-score: 12.5)Signal transduction Two-component systems TMAO reductase sytem sensor TorS (TIGR02956; EC 2.7.13.3; HMM-score: 12.2)and 2 moreCellular processes Pathogenesis virulence factor Mce family protein (TIGR00996; HMM-score: 11.1)Protein fate Protein and peptide secretion and trafficking type I secretion membrane fusion protein, HlyD family (TIGR01843; HMM-score: 4.1)
- TheSEED :
- hypothetical fig|282458.1.peg.573 homolog
- PFAM: no clan defined LXG; LXG domain of WXG superfamily (PF04740; HMM-score: 50.5)and 33 moreLaminin_II; Laminin Domain II (PF06009; HMM-score: 17.2)Tropomyosin-lke (CL0452) Tropomyosin_1; Tropomyosin like (PF12718; HMM-score: 17.2)no clan defined DegS; Sensor protein DegS (PF05384; HMM-score: 16.4)Ferritin (CL0044) DUF892; Domain of unknown function (DUF892) (PF05974; HMM-score: 16)no clan defined DUF3450; Protein of unknown function (DUF3450) (PF11932; HMM-score: 16)BCLiA (CL0551) APG6; Autophagy protein Apg6 (PF04111; HMM-score: 14.7)no clan defined DUF1664; Protein of unknown function (DUF1664) (PF07889; HMM-score: 13.5)DUF812; Protein of unknown function (DUF812) (PF05667; HMM-score: 13.4)TPR_MLP1_2; TPR/MLP1/MLP2-like protein (PF07926; HMM-score: 13.3)Fe_bilin_red; Ferredoxin-dependent bilin reductase (PF05996; HMM-score: 13.2)CALCOCO1; Calcium binding and coiled-coil domain (CALCOCO1) like (PF07888; HMM-score: 13.2)CorA; CorA-like Mg2+ transporter protein (PF01544; HMM-score: 13.1)GCN5L1; GCN5-like protein 1 (GCN5L1) (PF06320; HMM-score: 11.6)TMF_DNA_bd; TATA element modulatory factor 1 DNA binding (PF12329; HMM-score: 10.9)CemA; CemA family (PF03040; HMM-score: 10.3)Laminin_I; Laminin Domain I (PF06008; HMM-score: 10)Mce4_CUP1; Cholesterol uptake porter CUP1 of Mce4, putative (PF11887; HMM-score: 10)DUF4200; Domain of unknown function (DUF4200) (PF13863; HMM-score: 10)Exonuc_VII_L; Exonuclease VII, large subunit (PF02601; HMM-score: 9.8)GOLD-like (CL0521) GOLD_2; Golgi-dynamics membrane-trafficking (PF13897; HMM-score: 9.7)Reo_sigma (CL0326) Reo_sigmaC; Reovirus sigma C capsid protein (PF04582; HMM-score: 9.4)no clan defined Prominin; Prominin (PF05478; HMM-score: 9.1)DUF948; Bacterial protein of unknown function (DUF948) (PF06103; HMM-score: 8.9)TMPIT; TMPIT-like protein (PF07851; HMM-score: 8.9)SlyX; SlyX (PF04102; HMM-score: 8.8)DUF2570; Protein of unknown function (DUF2570) (PF10828; HMM-score: 8.2)DUF2935; Domain of unknown function (DUF2935) (PF11155; HMM-score: 8.1)V_ATPase_I; V-type ATPase 116kDa subunit family (PF01496; HMM-score: 7.8)DUF2353; Uncharacterized coiled-coil protein (DUF2353) (PF09789; HMM-score: 7.8)DUF5082; Domain of unknown function (DUF5082) (PF16888; HMM-score: 7.2)Fzo_mitofusin; fzo-like conserved region (PF04799; HMM-score: 6.7)Prefoldin (CL0200) Prefoldin; Prefoldin subunit (PF02996; HMM-score: 6.5)no clan defined Jnk-SapK_ap_N; JNK_SAPK-associated protein-1 (PF09744; HMM-score: 6.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 2
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.006641
- TAT(Tat/SPI): 0.001543
- LIPO(Sec/SPII): 0.000945
- predicted transmembrane helices (TMHMM): 2
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MSIDMYLDRSRNQASSVGNLSQTMNSNYDALEKAITQFINDDALKGKAYTSAKQFFSTVLIPLSTSMKTLSDLTKQACDNFVSRYTSEVDSISLKESELEEDIRSLSQQITRYENLTNNLKKHASDNQQAISSNQQIIQTLGQQKHELEEKLRKLREFNQKSPEIFKEVEEFQKIVQQGLTQAQNFWNFSTNQFNIPSGKELDWAKASHEKYLKVAMGKIEHKAEKETLNKADFAVIKAYAKEHPEDDIPKSIMKYINDNKDSIKRDIGLDITSTLLEQGGINASKFGVFINTAGGVKGPAGPNSFVEVKRTSGNVFIENGSKFAKGGKYLGKGVAGVGFGIGMYDDLANDNKTFGEALSHNGMTLAAGSVAAFGVAALVSNPVGWAVVGILTAGIIGSTVSDYLYQNNYFGIKDKVDWAGHKIDEGIDAVNKTAEKAVDSVGNAIGDATKSISNHINPMKWSW
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: SA0553 > SA0554 > SA0555
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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