Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN002476000
- symbol?: —
- synonym:
- description?: ABC transporter substrate-binding protein
- ABC transporter substrate-binding protein
- iron compound ABC transporter iron compound-binding protein
- iron compound ABC transporter, substrate-binding protein, putative
- iron compound ABC transporter substrate-binding protein
- putative iron compound ABC transporter iron compound-binding protein
- iron (Fe3+) ABC superfamily ATP binding cassette transporter, binding protein
- Vitamin B12 ABC transporter, B12-binding component BtuF
- Cobalamin-binding protein
- iron (Fe3+) ABC transporter binding protein
- iron-binding protein
- iron-binding transport protein
- iron compound ABC transporter, iron compound-binding protein, putative
- periplasmic binding family protein
- periplasmic binding protein
- putative transport system lipoprotein
- transport system lipoprotein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2994231..2995118
- synteny block?: BlockID0017120
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0586 (btuF)
08BA02176:
C248_0693
11819-97:
MS7_0662
6850:
RSAU_000566 (yvrC)
71193:
ST398NM01_0690
ECT-R 2:
ECTR2_562
ED133:
SAOV_0645
ED98:
SAAV_0573
HO 5096 0412:
SAEMRSA15_05370
JH1:
SaurJH1_0647
JH9:
SaurJH9_0632
JKD6008:
SAA6008_00627
JKD6159:
SAA6159_00566
LGA251:
SARLGA251_05450
M013:
M013TW_0598
MRSA252:
SAR0618
MSHR1132:
SAMSHR1132_05530
MSSA476:
SAS0577
Mu3:
SAHV_0607
Mu50:
SAV0609
MW2:
MW0573
RF122:
SAB0562
ST398:
SAPIG0690
T0131:
SAT0131_00676
TCH60:
HMPREF0772_12577
TW20:
SATW20_06860
USA300_TCH1516:
USA300HOU_0615
VC40:
SAVC_02690
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKKSLIAFILIFMLVLSGCGMKDNDKQGSNDNGSSKSPYHRIVSLMPSNTEILYELGLGK
N315 MKKSLIAFILIFMLVLSGCGMKDNDKQGSDDNGSSKSPYHRIVSLMPSNTEILYELGLGK
NCTC8325 --------------------MKDNDKQGSNDNGSSKSPYHRIVSLMPSNTEILYELGLGK
Newman MKKSLIAFILIFMLVLSGCGMKDNDKQGSNDNGSSKSPYHRIVSLMPSNTEILYELGLGK
USA300_FPR3757 --------------------MKDNDKQGSNDNGSSKSPYHRIVSLMPSNTEILYELGLGK
*********:******************************
COL YIVGVSTVDDYPKDVKKGKKQFDALNLNKEELLKAKPDLILAHESQKATANKVLSSLEKQ
N315 YIVGVSTVDDYPKDVKEGKKQFDALNLNKEELLKAKPDLILAHESQKATANKVLSSLEKQ
NCTC8325 YIVGVSTVDDYPKDVKKGKKQFDALNLNKEELLKAKPDLILAHESQKATANKVLSSLEKQ
Newman YIVGVSTVDDYPKDVKKGKKQFDALNLNKEELLKAKPDLILAHESQKATANKVLSSLEKQ
USA300_FPR3757 YIVGVSTVDDYPKDVKKGKKQFDALNLNKEELLKAKPDLILAHESQKATANKVLSSLEKQ
****************:*******************************************
COL GIKVVYVKDAQSIDETYNTFKQIGKLTHHDKQAEQLVEETKDNIDKVIDSIPAHHKKSKV
N315 GIKVVYVKDAQSIDETYNTFKQIGKLTHHDKQAEQLVEETKDNIDKVIDSIPAHHKKSKV
NCTC8325 GIKVVYVKDAQSIDETYNTFKQIGKLTHHDKQAEQLVEETKDNIDKVIDSIPAHHKKSKV
Newman GIKVVYVKDAQSIDETYNTFKQIGKLTHHDKQAEQLVEETKDNIDKVIDSIPAHHKKSKV
USA300_FPR3757 GIKVVYVKDAQSIDETYNTFKQIGKLTHHDKQAEQLVEETKDNIDKVIDSIPAHHKKSKV
************************************************************
COL FIEVSSKPEIYTAGKHTFFNDMLEKLEAQNVYSDINGWNPVTKESIIKKNPDILISTEAK
N315 FIEVSSKPEIYTAGKHTFFNDMLEKLEAQNVYSDINGWNPVTKESIIKKNPDILISTEAK
NCTC8325 FIEVSSKPEIYTAGKHTFFNDMLEKLEAQNVYSDINGWNPVTKESIIKKNPDILISTEAK
Newman FIEVSSKPEIYTAGKHTFFNDMLEKLEAQNVYSDINGWNPVTKESIIKKNPDILISTEAK
USA300_FPR3757 FIEVSSKPEIYTAGKHTFFNDMLEKLEAQNVYSDINGWNPVTKESIIKKNPDILISTEAK
************************************************************
COL TRSDYMDIIKKRGGFNKINAVKNTRIEVVNGDEVSRPGPRIDEGLKELRDAIYRK
N315 TRSDYMDIIKKRGGFNKINAVKNTRIEVVNGDEVSRPGPRIDEGLKELRDAIYRK
NCTC8325 TRSDYMDIIKKRGGFNKINAVKNTRIEVVNGDEVSRPGPRIDEGLKELRDAIYRK
Newman TRSDYMDIIKKRGGFNKINAVKNTRIEVVNGDEVSRPGPRIDEGLKELRDAIYRK
USA300_FPR3757 TRSDYMDIIKKRGGFNKINAVKNTRIEVVNGDEVSRPGPRIDEGLKELRDAIYRK
*******************************************************