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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002538000
- symbol?: graR
- synonym:
- description?: DNA-binding response regulator
- DNA-binding response regulator
- response regulator transcription factor
- two-component DNA-binding response regulator, putative
- response regulator protein GraR
- DNA-binding response regulator GraR
- putative response regulator protein
- response regulator protein
- response regulator receiver
- two-component response regulator
- Two-component response regulator BceR
- two component transcriptional regulator
- winged helix family two component transcriptional regulator
- YtsA
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3049136..3049819
- synteny block?: BlockID0017740
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0635 (bceR)
08BA02176:
C248_0743
11819-97:
MS7_0709 (graR)
6850:
RSAU_000635
71193:
ST398NM01_0737
ECT-R 2:
ECTR2_610
ED133:
SAOV_0693
ED98:
SAAV_0621
HO 5096 0412:
SAEMRSA15_05850
JH1:
SaurJH1_0697
JH9:
SaurJH9_0682
JKD6008:
SAA6008_00675 (graR)
JKD6159:
SAA6159_00613 (graR)
LGA251:
SARLGA251_05920 (graR)
M013:
M013TW_0646
MRSA252:
SAR0669
MSHR1132:
SAMSHR1132_06050
MSSA476:
SAS0624
Mu3:
SAHV_0656 (graR)
Mu50:
SAV0659
MW2:
MW0621
RF122:
SAB0608
ST398:
SAPIG0737
T0131:
SAT0131_00729
TCH60:
HMPREF0772_12529
TW20:
SATW20_07340 (graR)
USA300_TCH1516:
USA300HOU_0680
VC40:
SAVC_02925
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MIWMQILLVEDDNTLFQELKKELEQWDFNVAGIEDFGKVMDTFESFNPEIVILDVQLPKY
N315 ---MQILLVEDDNTLFQELKKELEQWDFNVAGIEDFGKVMDTFESFNPEIVILDVQLPKY
NCTC8325 ---MQILLVEDDNTLFQELKKELEQWDFNVAGIEDFGKVMDTFESFNPEIVILDVQLPKY
Newman ---MQILLVEDDNTLFQELKKELEQWDFNVAGIEDFGKVMDTFESFNPEIVILDVQLPKY
USA300_FPR3757 ---MQILLVEDDNTLFQELKKELEQWDFNVAGIEDFGKVMDTFESFNPEIVILDVQLPKY
*********************************************************
COL DGFYWCRKMREVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRR
N315 DGFYWCRKMREVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRR
NCTC8325 DGFYWCRKMREVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRR
Newman DGFYWCRKMREVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRR
USA300_FPR3757 DGFYWCRKMREVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRR
************************************************************
COL VYEFTAEEKRTLTWQDAVVDLSKDSIQKGDQTIFLSKTEMIILEILITKKNQIVSRDTII
N315 VYEFTAEEKRTLTWQDAVVDLSKDSIQKGDDTIFLSKTEMIILEILITKKNQIVSRDTII
NCTC8325 VYEFTAEEKRTLTWQDAVVDLSKDSIQKGDQTIFLSKTEMIILEILITKKNQIVSRDTII
Newman VYEFTAEEKRTLTWQDAVVDLSKDSIQKGDQTIFLSKTEMIILEILITKKNQIVSRDTII
USA300_FPR3757 VYEFTAEEKRTLTWQDAVVDLSKDSIQKGDQTIFLSKTEMIILEILITKKNQIVSRDTII
******************************:*****************************
COL TALWDDEAFVSDNTLTVNVNRLRKKLSEISMDSAIETKVGKGYMAHE
N315 TALWDDEAFVSDNTLTVNVNRLRKKLSEISMDSAIETKVGKGYMAHE
NCTC8325 TALWDDEAFVSDNTLTVNVNRLRKKLSEISMDSAIETKVGKGYMAHE
Newman TALWDDEAFVSDNTLTVNVNRLRKKLSEISMDSAIETKVGKGYMAHE
USA300_FPR3757 TALWDDEAFVSDNTLTVNVNRLRKKLSEISMDSAIETKVGKGYMAHE
***********************************************