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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002575000
- symbol?: —
- synonym:
- description?: deoxyribodipyrimidine photolyase
- deoxyribodipyrimidine photolyase
- deoxyribodipyrimidine photolyase, putative
- putative deoxyribodipyrimidine photolyase
- DNA photolyase family protein
- FAD binding domain of DNA photolyase family protein
- FAD binding domain of DNA photolyase protein
- putative DNA photolyase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3087228..3088831
- synteny block?: BlockID0018110
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0668
08BA02176:
C248_0776
11819-97:
MS7_0743
6850:
RSAU_000667
71193:
ST398NM01_0769
ECT-R 2:
ECTR2_643
ED133:
SAOV_0726
ED98:
SAAV_0654
HO 5096 0412:
SAEMRSA15_06170
JH1:
SaurJH1_0731
JH9:
SaurJH9_0715
JKD6008:
SAA6008_00708 (phrB)
JKD6159:
SAA6159_00646 (phrB)
LGA251:
SARLGA251_06240
M013:
M013TW_0678
MRSA252:
SAR0744
MSHR1132:
SAMSHR1132_06370
MSSA476:
SAS0656
Mu3:
SAHV_0688
Mu50:
SAV0691
MW2:
MW0653
RF122:
SAB0640
ST398:
SAPIG0769
T0131:
SAT0131_00762
TCH60:
HMPREF0772_12496 (phrB)
TW20:
SATW20_07660
USA300_TCH1516:
USA300HOU_0714 (phrB)
VC40:
SAVC_03090
⊟Genome Viewer[edit | edit source]
COL | |
N315 | |
NCTC8325 | |
Newman | |
USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MAIAVLLNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSSASDLKAQFYRGTLQRFY
N315 MAIAVLLNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSSASDLKAQFYRGTLQRFY
NCTC8325 MAIAVLLNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSSASDLKAQFYRGTLQRFY
Newman MAIAVLLNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSSASDLKAQFYRGTLQRFY
USA300_FPR3757 MAIAVLLNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSSASDLKAQFYRGTLQRFY
************************************************************
COL QSLHAEKLTPYVMSYDDIISFCKENNISEVVTAGDIMSYHLEEYDILHQRSLFNEARIAV
N315 QSLHAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQRSLFNEARIAV
NCTC8325 QSLHAEKLTPYVMSYDDIISFCKENNISEVVTAGDIMSYHLEEYDILHQRSLFNEARIAV
Newman QSLHAEKLTPYVMSYDDIISFCKENNISEVVTAGDIMSYHLEEYDILHQRSLFNEARIAV
USA300_FPR3757 QSLHAEKLTPYVMSYDDIISFCKENNISEVVTAGDIMSYHLEEYDILHQRSLFNEARIAV
******************************* ****************************
COL TLIRGNHYFKASKTMNQQGEPYNVFTSFYKKWRPYLRHRDVYHYDLKSFEDFVIASPDDL
N315 TLIRGNHYFKASKTMNQQGEPYKVFTSFYRKWRPYLRHRDVYHYDLKSFEDFVIASPDDL
NCTC8325 TLIRGNHYFKASKTMNQQGEPYNVFTSFYKKWRPYLRHRDVYHYDLKSFENFVIASPDDL
Newman TLIRGNHYFKASKTMNQQGEPYNVFTSFYKKWRPYLRHRDVYHYDLKSFEDFVIASPDDL
USA300_FPR3757 TLIRGNHYFKASKTMNQQGEPYNVFTSFYKKWRPYLRHRDVYHYDLKSFEDFVIASPDDL
**********************:******:********************:*********
COL VFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFN
N315 VFDDIAFGSSQVIEQNKWQHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFN
NCTC8325 VFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFN
Newman VFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFN
USA300_FPR3757 VFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFN
***********:************************************************
COL DLLARYDEDEANYEAFIRELIFREFYYVLMTQYPETSYQAFKPKYRQIKWSQNEADFNAW
N315 DLLARYDEDEANHEAFIRELIFREFYYVLMTQYPETSYQAFKPKYRQIKWSQNEANFNAW
NCTC8325 DLLARYDEDEANYEAFIRELIFREFYYVLMTQYPETSYQAFKPKYRQIKWSQNEADFNAW
Newman DLLARYDEDEANYEAFIRELIFREFYYVLMTQYPETSYQAFKPKYRQIKWSQNEADFNAW
USA300_FPR3757 DLLARYDEDEANYEAFIRELIFREFYYVLMTQYPETSYQAFKPKYRQIKWSQNEADFNAW
************:******************************************:****
COL CEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLIDYDAA
N315 CEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLIDYDAA
NCTC8325 CEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLIDYDAA
Newman CEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLIDYDAA
USA300_FPR3757 CEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLIDYDAA
************************************************************
COL SNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLHDTQRN
N315 SNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLHDTQRN
NCTC8325 SNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLHDTQRN
Newman SNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLHDTQRN
USA300_FPR3757 SNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLHDTQRN
************************************************************
COL ESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKALD
N315 ESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKALD
NCTC8325 ESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKALD
Newman ESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKALD
USA300_FPR3757 ESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKALD
*************************************