PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002777000
• symbol^?: —
• synonym:
• description^?: membrane protein
• strand^?: +
• coordinates^?: 3246635..3247078
• synteny block^?: BlockID0019790
• occurrence^?: in 79% of 33 strains

⊟Orthologs

COL:
SACOL0854
N315:
SA0740
NCTC8325:
SAOUHSC_00810
Newman:
NWMN_0754
USA300_FPR3757:
SAUSA300_0770
04-02981:
SA2981_0764
08BA02176:
—
11819-97:
MS7_0837
6850:
RSAU_000763
71193:
—
ECT-R 2:
ECTR2_737
ED133:
SAOV_0826
ED98:
SAAV_0755
HO 5096 0412:
—
JH1:
SaurJH1_0826
JH9:
SaurJH9_0810
JKD6008:
SAA6008_00801
JKD6159:
SAA6159_00741
LGA251:
SARLGA251_07170
M013:
M013TW_0775
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS0750
Mu3:
SAHV_0805
Mu50:
SAV0809
MW2:
MW0762
RF122:
SAB0742
ST398:
—
T0131:
SAT0131_00882
TCH60:
—
TW20:
SATW20_08600
USA300_TCH1516:
USA300HOU_0817
VC40:
SAVC_03570

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MINIISAIGSIGTFIMALFYFVSVSVQLYQMKISFLPALGFNQILLEREEDQLNIMNSAT
  N315            MINIISAIGSIGTFIMALFYFVSVSVQLYQMKISFLPALGFNQILLEREKDQLNIMNSAT
  NCTC8325        MINIISAIGSIGTFIMALFYFVSVSVQLYQMKISFLPALGFNQILLEREEDQLNIMNSAT
  Newman          MINIISAIGSIGTFIMALFYFVSVSVQLYQMKISFLPALGFNQILLEREEDQLNIMNSAT
  USA300_FPR3757  MINIISAIGSIGTFIMALFYFVSVSVQLYQMKISFLPALGFNQILLEREEDQLNIMNSAT
                  *************************************************:**********
  
  COL             EEHHHKDYIKLYNLGGGAAKKIAIEVLLGKDKVIQKKYVHILPSKEGYMLPINKNVYEEL
  N315            EEHHHKDYIKLYNLGGGAAKKIAIEVLLGNDKVIQKKYVNILPSKEGYMLPINKNVYEEL
  NCTC8325        EEHHHKDYIKLYNLGGGAAKKIAIEVLLGKDKVIQKKYVHILPSKEGYMLPINKNVYEEL
  Newman          EEHHHKDYIKLYNLGGGAAKKIAIEVLLGKDKVIQKKYVHILPSKEGYMLPINKNVYEEL
  USA300_FPR3757  EEHHHKDYIKLYNLGGGAAKKIAIEVLLGKDKVIQKKYVHILPSKEGYMLPINKNVYEEL
                  *****************************:*********:********************
  
  COL             ERTIENNGHEADLNVRMTYYHNVSRKQQEVILKGQIDRFNTYNNKEIYDLQFI
  N315            ERTIENNGYEADLNVRMTYYHNVSRKQQEVILKGQIDRFNTYNNKEIYDLQFI
  NCTC8325        ERTIENNGHEADLNVRMTYYHNVSRKQQEVILKGQIDRFNTYNNKEIYDLQFI
  Newman          ERTIENNGHEADLNVRMTYYHNVSRKQQEVILKGQIDRFNTYNNKEIYDLQFI
  USA300_FPR3757  ERTIENNGHEADLNVRMTYYHNVSRKQ--------------------------
                  ********:******************