From AureoWiki
Jump to navigation Jump to search

Summary[edit | edit source]

  • pan ID?: SAUPAN002777000
  • symbol?:
  • synonym:
  • description?: membrane protein
  • strand?: +
  • coordinates?: 3246635..3247078
  • synteny block?: BlockID0019790
  • occurrence?: in 79% of 33 strains

Orthologs[edit | edit source]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0764
    08BA02176:
    11819-97:
    MS7_0837
    6850:
    RSAU_000763
    71193:
    ECT-R 2:
    ECTR2_737
    ED133:
    SAOV_0826
    ED98:
    SAAV_0755
    HO 5096 0412:
    JH1:
    SaurJH1_0826
    JH9:
    SaurJH9_0810
    JKD6008:
    SAA6008_00801
    JKD6159:
    SAA6159_00741
    LGA251:
    SARLGA251_07170
    M013:
    M013TW_0775
    MRSA252:
    MSHR1132:
    MSSA476:
    SAS0750
    Mu3:
    SAHV_0805
    Mu50:
    SAV0809
    MW2:
    MW0762
    RF122:
    SAB0742
    ST398:
    T0131:
    SAT0131_00882
    TCH60:
    TW20:
    SATW20_08600
    USA300_TCH1516:
    USA300HOU_0817
    VC40:
    SAVC_03570

Genome Viewer[edit | edit source]

COL
N315
NCTC8325
Newman
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    COL             MINIISAIGSIGTFIMALFYFVSVSVQLYQMKISFLPALGFNQILLEREEDQLNIMNSAT
    N315            MINIISAIGSIGTFIMALFYFVSVSVQLYQMKISFLPALGFNQILLEREKDQLNIMNSAT
    NCTC8325        MINIISAIGSIGTFIMALFYFVSVSVQLYQMKISFLPALGFNQILLEREEDQLNIMNSAT
    Newman          MINIISAIGSIGTFIMALFYFVSVSVQLYQMKISFLPALGFNQILLEREEDQLNIMNSAT
    USA300_FPR3757  MINIISAIGSIGTFIMALFYFVSVSVQLYQMKISFLPALGFNQILLEREEDQLNIMNSAT
                    *************************************************:**********

    COL             EEHHHKDYIKLYNLGGGAAKKIAIEVLLGKDKVIQKKYVHILPSKEGYMLPINKNVYEEL
    N315            EEHHHKDYIKLYNLGGGAAKKIAIEVLLGNDKVIQKKYVNILPSKEGYMLPINKNVYEEL
    NCTC8325        EEHHHKDYIKLYNLGGGAAKKIAIEVLLGKDKVIQKKYVHILPSKEGYMLPINKNVYEEL
    Newman          EEHHHKDYIKLYNLGGGAAKKIAIEVLLGKDKVIQKKYVHILPSKEGYMLPINKNVYEEL
    USA300_FPR3757  EEHHHKDYIKLYNLGGGAAKKIAIEVLLGKDKVIQKKYVHILPSKEGYMLPINKNVYEEL
                    *****************************:*********:********************

    COL             ERTIENNGHEADLNVRMTYYHNVSRKQQEVILKGQIDRFNTYNNKEIYDLQFI
    N315            ERTIENNGYEADLNVRMTYYHNVSRKQQEVILKGQIDRFNTYNNKEIYDLQFI
    NCTC8325        ERTIENNGHEADLNVRMTYYHNVSRKQQEVILKGQIDRFNTYNNKEIYDLQFI
    Newman          ERTIENNGHEADLNVRMTYYHNVSRKQQEVILKGQIDRFNTYNNKEIYDLQFI
    USA300_FPR3757  ERTIENNGHEADLNVRMTYYHNVSRKQ--------------------------
                    ********:******************