PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002880000
• symbol^?: ear
• synonym:
• description^?: Ear protein

  descriptions from strain specific annotations:

  • Ear protein
  • Secreted protein Ear, superantigen-encodingpathogenicity islands SaPI
• strand^?: -
• coordinates^?: 3327358..3327915
• synteny block^?: BlockID0020510
• occurrence^?: in 15% of 33 strains

⊟Orthologs

COL:
SACOL0908
N315:
—
NCTC8325:
—
Newman:
—
USA300_FPR3757:
SAUSA300_0815 (ear)
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
M013TW_0829
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
—
TCH60:
HMPREF0772_12340 (ear)
TW20:
—
USA300_TCH1516:
USA300HOU_0867 (ear)
VC40:
—

⊟Genome Viewer

COL
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MNKKLLTRTLIASALVLTTVGSGFHSSSNYNGINNVAKASEITDRDLWKNVRDALKEANI
  USA300_FPR3757  MNKKLLTKTLIASALVLTTVGSGFHSSSNYNGINNVAKAEQTTDNELWKNVRDALKEANI
                  *******:*******************************.: **.:**************
  
  COL             IDKTANETVGVTYNLNNGGESSITGTADLDELSNFNNKPINTDSVKRIDLSRINPNGNRF
  USA300_FPR3757  IDKTDNENVKVTYKLANGGENSIEGTANLNELSNSNNKPINSDSVKSIDLSRKNPNGDRF
                  **** **.* ***:* ****.** ***:*:**** ******:**** ***** ****:**
  
  COL             DANDAWKKLTDKLKEKQIVKNGDTVTIHSKDKNDPPISAKVGENYNGNKGLMLNQRDITK
  USA300_FPR3757  DANDAWKKLTDKLKEKQIVKDGDTVTIHSKDEKDPKISAKVGEVYNDNKRLMLFKKDIDK
                  ********************:**********::** ******* **.** *** ::** *
  
  COL             ITITK
  USA300_FPR3757  ITIN-
                  ***.