PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003124000
• symbol^?: —
• synonym:
• description^?: MAP domain-containing protein

  descriptions from strain specific annotations:

  • MAP domain-containing protein
  • truncated MHC class II analog protein
  • putative surface protein
  • surface protein
  • cell surface like-protein Map-w
  • extracellular adherence protein Eap
  • map-ND2C domain protein
  • outer membrane protein
  • putative cell surface protein , Map-w-like protein
  • surface protein, putative
  • truncated cell surface protein map-W
• strand^?: +
• coordinates^?: 3508967..3509401
• synteny block^?: BlockID0022160
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0985
N315:
SA0841
NCTC8325:
SAOUHSC_00918
Newman:
NWMN_0851
USA300_FPR3757:
SAUSA300_0883
04-02981:
SA2981_0936
08BA02176:
C248_1004
11819-97:
MS7_0936
6850:
RSAU_000857
71193:
ST398NM01_0977
ECT-R 2:
ECTR2_836
ED133:
SAOV_0927
ED98:
SAAV_0942
HO 5096 0412:
SAEMRSA15_08100
JH1:
SaurJH1_0999
JH9:
SaurJH9_0980
JKD6008:
SAA6008_00934 (eap)
JKD6159:
SAA6159_00837 (eap)
LGA251:
SARLGA251_08980
M013:
M013TW_0903
MRSA252:
SAR0944
MSHR1132:
SAMSHR1132_08290
MSSA476:
SAS0851
Mu3:
SAHV_0976
Mu50:
SAV0981
MW2:
MW0863
RF122:
SAB0846
ST398:
SAPIG0977
T0131:
SAT0131_01014 (atpF)
TCH60:
HMPREF0772_12264
TW20:
SATW20_09800
USA300_TCH1516:
USA300HOU_0939 (eap)
VC40:
SAVC_04075

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKLKSFITVTLALGMIATTGATVAGNEVSAAEKDKLPATQKAKEMQNVPYTIAVDGIMAF
  N315            MKLKSFITVTLALGMIATTGATVTSNEVSAAEKDKLPATQKAKEMQNVPYTIAVDGIMAF
  NCTC8325        MKLKSFITVTLALGMIATTGATVAGNEVSAAEKDKLPATQKAKEMQNVPYTIAVDGIMAF
  Newman          MKLKSFITVTLALGMIATTGATVAGNEVSAAEKDKLPATQKAKEMQNVPYTIAVDGIMAF
  USA300_FPR3757  MKLKSFITVTLALGMIATTGATVAGNEVSAAEKDKLPATQKAKEMQNVPYTIAVDGIMAF
                  ***********************:.***********************************
  
  COL             NQSYLNLPKDSQLSYLDLGNKVKALLYDERGVTPEKIRNAKSAVYTITWKDGSKKEVDLK
  N315            NQSYLNLPKDSQLSYLDLGNKVKALLYDERGVTPEKIRNAKSAVYTITWKDGSKKEVDLK
  NCTC8325        NQSYLNLPKDSQLSYLDLGNKVKALLYDERGVTPEKIRNAKSAVYTITWKDGSKKEVDLK
  Newman          NQSYLNLPKDSQLSYLDLGNKVKALLYDERGVTPEKIRNAKSAVYTITWKDGSKKEVDLK
  USA300_FPR3757  NQSYLNLPKDSQLSYLDLGNKVKALLYDERGVTPEKIRNAKSAVYTITWKDGSKKEVDLK
                  ************************************************************
  
  COL             KDSYTANLFDSNSIKQIDINVKTK
  N315            KDSYTANLFDSNSIKQIDINVKTK
  NCTC8325        KDSYTANLFDSNSIKQIDINVKTK
  Newman          KDSYTANLFDSNSIKQIDINVKTK
  USA300_FPR3757  KDSYTANLFDSNSIKQIDINVKTK
                  ************************