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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003192000
- symbol?: —
- synonym:
- description?: RNA ligase, putative
- RNA ligase, putative
- 2-5 RNA ligase
- 2',5' RNA ligase
- 2H phosphoesterase superfamily protein Bsu1186(yjcG)
- conserved protein YjcG
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3584655..3585164
- synteny block?: BlockID0022790
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0969
08BA02176:
C248_1039
11819-97:
MS7_0970
6850:
RSAU_000895
71193:
ST398NM01_1010
ECT-R 2:
ECTR2_869
ED133:
SAOV_0960
ED98:
SAAV_0977
HO 5096 0412:
SAEMRSA15_08450
JH1:
SaurJH1_1032
JH9:
SaurJH9_1013
JKD6008:
SAA6008_00969
JKD6159:
SAA6159_00871
LGA251:
SARLGA251_09300
M013:
M013TW_0939
MRSA252:
SAR0985
MSHR1132:
SAMSHR1132_08620
MSSA476:
SAS0884
Mu3:
SAHV_1009
Mu50:
SAV1015
MW2:
MW0896
RF122:
SAB0881
ST398:
SAPIG1010
T0131:
SAT0131_01049
TCH60:
HMPREF0772_12219
TW20:
SATW20_10120
USA300_TCH1516:
USA300HOU_0973
VC40:
SAVC_04240
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MILGLALIPSKSFQEAVDSYRKRYDKQYSRIKPHVTIKAPFEIKDGDLDSVIEQVRARIN
N315 MILGLALIPSKSFQEAVDSYRKRYDKQYSRIKPHVTIKAPFEIEDGDLDSVIEQVRARIN
NCTC8325 MILGLALIPSKSFQEAVDSYRKRYDKQYSRIKPHVTIKAPFEIKDGDLDSVIEQVRARIN
Newman MILGLALIPSKSFQEAVDSYRKRYDKQYSRIKPHVTIKAPFEIKDGDLDSVIEQVRARIN
USA300_FPR3757 MILGLALIPSKSFQEAVDSYRKRYDKQYSRIKPHVTIKAPFEIKDGDLDSVIEQVRARIN
*******************************************:****************
COL GIPAVEVHATKASSFKPTNNVIYFKVAKTDDLEELFNRFNGEDFYGEAEHVFVPHFTIAQ
N315 GIPAVEVHATKASSFKPTNNVIYFKVAKTDDLEELFNRFNGEDFYGEAEHVFVPHFTIAQ
NCTC8325 GIPAVEVHATKASSFKPTNNVIYFKVAKTDDLEELFNRFNGEDFYGEAEHVFVPHFTIAQ
Newman GIPAVEVHATKASSFKPTNNVIYFKVAKTDDLEELFNRFNGEDFYGEAEHVFVPHFTIAQ
USA300_FPR3757 GIPAVEVHATKASSFKPTNNVIYFKVAKTDDLEELFNRFNGEDFYGEAEHVFVPHFTIAQ
************************************************************
COL GLSSQEFEDIFGQVALAGVDHKEIIDELTLLRFDDDEDKWKVIETFKLA
N315 GLSSQEFEDIFGQVALAGVDHKEIIDELTLLRFDDDEDKWKVIETFKLA
NCTC8325 GLSSQEFEDIFGQVALAGVDHKEIIDELTLLRFDDDEDKWKVIETFKLA
Newman GLSSQEFEDIFGQVALAGVDHKEIIDELTLLRFDDDEDKWKVIETFKLA
USA300_FPR3757 GLSSQEFEDIFGQVALAGVDHKEIIDELTLLRFDDDEDKWKVIETFKLA
*************************************************