PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003201000
• symbol^?: —
• synonym:
• description^?: membrane protein

  descriptions from strain specific annotations:

  • membrane protein
  • integral membrane protein, TerC family
  • TerC family membrane protein
  • TerC family protein
  • toxic anion resistance protein
  • integral membrane protein TerC
  • integral membrane protein TerC family protein
  • Tellurite resistance protein
  • TerC family integral membrane protein
  • toxic anion resistance membrane protein
  • toxic anion resistance protein homologue
• strand^?: +
• coordinates^?: 3591761..3592570
• synteny block^?: BlockID0022880
• occurrence^?: in 100% of 33 strains

Suggest pan-symbol of "mntY" and description of "manganese efflux pump and exoprotein metalation enzyme" to harmonize with https://doi.org/10.1101/2024.09.30.615890

⊟Orthologs

COL:
SACOL1026
N315:
SA0878
NCTC8325:
SAOUHSC_00957
Newman:
NWMN_0891
USA300_FPR3757:
SAUSA300_0922
04-02981:
SA2981_0975
08BA02176:
C248_1044
11819-97:
MS7_0977
6850:
RSAU_000906
71193:
ST398NM01_1017
ECT-R 2:
ECTR2_876
ED133:
SAOV_0965
ED98:
SAAV_0984
HO 5096 0412:
SAEMRSA15_08510
JH1:
SaurJH1_1038
JH9:
SaurJH9_1019
JKD6008:
SAA6008_00976 (terC)
JKD6159:
SAA6159_00877 (terC)
LGA251:
SARLGA251_09360
M013:
M013TW_0946
MRSA252:
SAR0991
MSHR1132:
SAMSHR1132_08680
MSSA476:
SAS0890
Mu3:
SAHV_1015
Mu50:
SAV1022
MW2:
MW0902
RF122:
SAB0887
ST398:
SAPIG1017
T0131:
SAT0131_01056
TCH60:
HMPREF0772_12213
TW20:
SATW20_10180
USA300_TCH1516:
USA300HOU_0979
VC40:
SAVC_04270

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MLMDPSLILPYLWVLVVLVFLEGLLAADNAIVMAVMVKHLPPEQRKKALFYGLLGAFVFR
  N315            MLMDPSLILPYLWVLVVLVFLEGLLAADNAIVMAVMVKHLPPEQRKKALFYGLLGAFVFR
  NCTC8325        MLMDPSLILPYLWVLVVLVFLEGLLAADNAIVMAVMVKHLPPEQRKKALFYGLLGAFVFR
  Newman          MLMDPSLILPYLWVLVVLVFLEGLLAADNAIVMAVMVKHLPPEQRKKALFYGLLGAFVFR
  USA300_FPR3757  MLMDPSLILPYLWVLVVLVFLEGLLAADNAIVMAVMVKHLPPEQRKKALFYGLLGAFVFR
                  ************************************************************
  
  COL             FLALFLISIIANFWFIQAAGAVYLIYMSIKNLWQFFKHPEIESPEAGDDHHYDESGEEIK
  N315            FLALFLISIIANFWFIQAAGAVYLIYMSIKNLWQFFKHPEIESPEAGDDHHYDESGEEIK
  NCTC8325        FLALFLISIIANFWFIQAAGAVYLIYMSIKNLWQFFKHPEIESPEAGDDHHYDESGEEIK
  Newman          FLALFLISIIANFWFIQAAGAVYLIYMSIKNLWQFFKHPEIESPEAGDDHHYDESGEEIK
  USA300_FPR3757  FLALFLISIIANFWFIQAAGAVYLIYMSIKNLWQFFKHPEIESPEAGDDHHYDESGEEIK
                  ************************************************************
  
  COL             ASNKSFWGTVLKIEFADIAFAIDSMLAALAIAVTLPKVGIHFGGMDLGQFVVMFLGGMIG
  N315            ASNKSFWGTVLKIEFADIAFAIDSMLAALAIAVTLPKVGIHFGGMDLGQFVVMFLGGMIG
  NCTC8325        ASNKSFWGTVLKIEFADIAFAIDSMLAALAIAVTLPKVGIHFGGMDLGQFVVMFLGGMIG
  Newman          ASNKSFWGTVLKIEFADIAFAIDSMLAALAIAVTLPKVGIHFGGMDLGQFVVMFLGGMIG
  USA300_FPR3757  ASNKSFWGTVLKIEFADIAFAIDSMLAALAIAVTLPKVGIHFGGMDLGQFVVMFLGGMIG
                  ************************************************************
  
  COL             VILMRYAATWFVELLNKYPGLEGAAFAIVGWVGVKLVVMVLAHPDIAVLPEHFPHGVLWQ
  N315            VILMRYAATWFVELLNKYPGLEGAAFAIVGWVGVKLVVMVLAHPDIAVLPEHFPHGVLWQ
  NCTC8325        VILMRYAATWFVELLNKYPGLEGAAFAIVGWVGVKLVVMVLAHPDIAVLPEHFPHGVLWQ
  Newman          VILMRYAATWFVELLNKYPGLEGAAFAIVGWVGVKLVVMVLAHPDIAVLPEHFPHGVLWQ
  USA300_FPR3757  VILMRYAATWFVELLNKYPGLEGAAFAIVGWVGVKLVVMVLAHPDIAVLPEHFPHGVLWQ
                  ************************************************************
  
  COL             SIFWTVLIGLVIIGWLGSVVKNKKSHK
  N315            SIFWTVLIGLVIIGWLGSVVKNKKSHK
  NCTC8325        SIFWTVLIGLVIIGWLGSVVKNKKSHK
  Newman          SIFWTVLIGLVIIGWLGSVVKNKKSHK
  USA300_FPR3757  SIFWTVLIGLVIIGWLGSVVKNKKSHK
                  ***************************