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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_0922 [new locus tag: SAUSA300_RS04955 ]
  • pan locus tag?: SAUPAN003201000
  • symbol: SAUSA300_0922
  • pan gene symbol?: —
  • synonym:
  • product: TerC family membrane protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_0922 [new locus tag: SAUSA300_RS04955 ]
  • symbol: SAUSA300_0922
  • product: TerC family membrane protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1012209..1013012
  • length: 804
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGTTAATGGATCCAAGTTTGATCTTACCTTATTTATGGGTACTTGTCGTTTTAGTATTT
    TTAGAAGGCTTATTAGCAGCAGATAACGCGATTGTTATGGCTGTAATGGTTAAGCACTTA
    CCACCCGAACAACGTAAAAAAGCTTTGTTTTACGGTTTGTTAGGTGCATTTGTATTTAGA
    TTTTTAGCATTATTCTTAATTAGTATTATCGCGAACTTTTGGTTTATTCAAGCTGCAGGA
    GCGGTTTACTTAATTTATATGTCAATCAAAAATCTGTGGCAGTTCTTTAAACACCCAGAA
    ATTGAAAGTCCTGAAGCTGGAGATGATCATCATTATGATGAATCTGGTGAAGAGATTAAA
    GCAAGTAACAAATCATTCTGGGGAACTGTGTTGAAAATAGAATTTGCAGATATCGCATTT
    GCCATTGATTCTATGCTTGCTGCTTTAGCTATTGCTGTAACACTTCCTAAAGTTGGTATT
    CACTTTGGTGGTATGGACTTAGGTCAGTTCGTAGTCATGTTCCTAGGTGGAATGATTGGT
    GTTATTCTAATGCGTTATGCAGCAACATGGTTTGTAGAGCTATTAAACAAATATCCAGGA
    CTTGAAGGTGCAGCCTTCGCGATCGTTGGTTGGGTAGGTGTTAAATTAGTTGTCATGGTA
    TTAGCGCACCCAGACATCGCTGTATTGCCTGAGCACTTCCCACATGGCGTATTATGGCAA
    TCTATTTTCTGGACAGTACTAATTGGATTAGTAATTATCGGTTGGTTAGGTTCAGTTGTT
    AAAAATAAAAAATCGCATAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    804

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_0922 [new locus tag: SAUSA300_RS04955 ]
  • symbol: SAUSA300_0922
  • description: TerC family membrane protein
  • length: 267
  • theoretical pI: 6.80419
  • theoretical MW: 29702.3
  • GRAVY: 0.792509

⊟Function[edit | edit source]

  • TIGRFAM:
    integral membrane protein, YkoY family (TIGR03716; HMM-score: 297.4)
    and 2 more
    integral membrane protein, YjbE family (TIGR03717; HMM-score: 88.1)
    integral membrane protein, TerC family (TIGR03718; HMM-score: 32.8)
  • TheSEED  :
    • Integral membrane protein TerC family
  • PFAM:
    LysE (CL0292) TerC; Integral membrane protein TerC family (PF03741; HMM-score: 175.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 7
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.063575
    • TAT(Tat/SPI): 0.000407
    • LIPO(Sec/SPII): 0.036015
  • predicted transmembrane helices (TMHMM): 7

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MLMDPSLILPYLWVLVVLVFLEGLLAADNAIVMAVMVKHLPPEQRKKALFYGLLGAFVFRFLALFLISIIANFWFIQAAGAVYLIYMSIKNLWQFFKHPEIESPEAGDDHHYDESGEEIKASNKSFWGTVLKIEFADIAFAIDSMLAALAIAVTLPKVGIHFGGMDLGQFVVMFLGGMIGVILMRYAATWFVELLNKYPGLEGAAFAIVGWVGVKLVVMVLAHPDIAVLPEHFPHGVLWQSIFWTVLIGLVIIGWLGSVVKNKKSHK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: yybP-ykoY motif (transcription antitermination) regulon
    yybP-ykoY motif(RNA)regulatory site identified based on RegPrecise data for N315 RegPrecise 

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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