Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN003324000
- symbol?: potB
- synonym:
- description?: spermidine/putrescine ABC transporter permease
- spermidine/putrescine ABC transporter permease
- ABC transporter permease
- spermidine/putrescine ABC transporter, permease protein PotB
- spermidine/putrescine ABC transporter permease protein
- Spermidine/putrescine ABC transporter, permease protein
- Spermidine Putrescine ABC transporter permease component potB
- binding--dependent transport system inner membrane component family protein
- binding-protein-dependent transport system inner membrane component family protein
- binding-protein-dependent transport system inner membrane protein
- pseudogene
- putative ABC transport system permease
- spermidine/putrescine ABC superfamily ATP binding cassette transporter, permease protein
- spermidine/putrescine ABC transporter
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3691593..3692391
- synteny block?: BlockID0024080
- occurrence?: in 97% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1057 (potB)
08BA02176:
C248_1127
11819-97:
MS7_1057
6850:
RSAU_000985 (potB)
71193:
ST398NM01_1097
ECT-R 2:
ECTR2_955
ED133:
SAOV_1044
ED98:
SAAV_1065
HO 5096 0412:
SAEMRSA15_09300
JH1:
SaurJH1_1182
JH9:
SaurJH9_1160
JKD6008:
SAA6008_01055 (potB)
JKD6159:
SAA6159_00956 (potB)
LGA251:
SARLGA251_10130
M013:
M013TW_1032
MRSA252:
SAR1074
MSHR1132:
SAMSHR1132_09470
MSSA476:
SAS1035
Mu3:
SAHV_1092 (potB)
Mu50:
SAV1100 (potB)
MW2:
MW0983 (potB)
RF122:
SAB0966
ST398:
SAPIG1097
T0131:
SAT0131_01138
TCH60:
HMPREF0772_12132 (potB)
TW20:
SATW20_10950
USA300_TCH1516:
—
VC40:
SAVC_04660
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MRNTNKFLLIPYLLWMVIFIIVPVVLLIYFSFLDINGHFSFTNYQQIFTTKYLKMFAYSI
N315 MRNTNKFLLIPYLLWMVIFIIVPVVLLIYFSFLDINGHFSFTNYQQIFTTKYLKMFAYSI
NCTC8325 MRNTNKFLLIPYLLWMVIFIIVPVVLLIYFSFLDINGHFSFTNYQQIFTTKYLKMFAYSI
Newman MRNTNKFLLIPYLLWMVIFIIVPVVLLIYFSFLDINGHFSFTNYQQIFTTKYLKMFAYSI
USA300_FPR3757 MRNTNKFLLIPYLLWMVIFIIVPVVLLIYFSFLDINGHFSFTNYQQIFTTKYLKMFAYSI
************************************************************
COL LYAASITIITLTISYPAAYYITRSKFQNILLMIMIIPTWINLLLKTYAFIGLLSHDGVIN
N315 LYAALITIITLAISYPAAYYITRSKFQNILLMIMIIPTWINLLLKTYAFIGLLSHDGVIN
NCTC8325 LYAASITIITLTISYPAAYYITRSKFQNILLMIMIIPTWINLLLKTYAFIGLLSHDGVIN
Newman LYAASITIITLTISYPAAYYITRSKFQNILLMIMIIPTWINLLLKTYAFIGLLSHDGVIN
USA300_FPR3757 LYAASITIITLTISYPAAYYITRSKFQNILLMIMIIPTWINLLLKTYAFIGLLSHDGVIN
**** ******:************************************************
COL QFFHLFNLPSFNLLFTTGAFLVVASYIYIPFMILPIFNSMKAIPNNLLQASSDLGASPFY
N315 QFFHLFNLPSFNLLFTTGAFLVVASYIYIPFMILPIFNSMKAIPNNLLQASSDLGASPFY
NCTC8325 QFFHLFNLPSFNLLFTTGAFLVVASYIYIPFMILPIFNSMKAIPNNLLQASSDLGASPFY
Newman QFFHLFNLPSFNLLFTTGAFLVVASYIYIPFMILPIFNSMKAIPNNLLQASSDLGASPFY
USA300_FPR3757 QFFHLFNLPSFNLLFTTGAFLVVASYIYIPFMILPIFNSMKAIPNNLLQASSDLGASPFY
************************************************************
COL TFRKVIMPLTKEGVMTGIQVTFIPSLSLFMITRLIAGNKVINIGTAIEEQFLTIQNYGMG
N315 TFRKVIMPLTKEGVMTGIQVTFIPSLSLFMITRLIAGNKVINIGTAIEEQFLTIQNYGMG
NCTC8325 TFRKVIMPLTKEGVMTGIQVTFIPSLSLFMITRLIAGNKVINIGTAIEEQFLTIQNYGMG
Newman TFRKVIMPLTKEGVMTGIQVTFIPSLSLFMITRLIAGNKVINIGTAIEEQFLTIQNYGMG
USA300_FPR3757 TFRKVIMPLTKEGVMTGIQVTFIPSLSLFMITRLIAGNKVINIGTAIEEQFLTIQNYGMG
************************************************************
COL STIAIFLIVFMAFILIITKSSNGRG
N315 STIAIFLIVFMAFILIITKSSNGRG
NCTC8325 STIAIFLIVFMAFILIITKSSNGRG
Newman STIAIFLIVFMAFILIITKSSNGRG
USA300_FPR3757 STIAIFLIVFMAFILIITKSSNGRG
*************************