Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN003431000
- symbol?: —
- synonym:
- description?: YfcC family protein
- YfcC family protein
- C4-dicarboxylate transporter permease subunit, putative
- TRAP family protein
- APC family amino acid-polyamine-organocation transporter, antiporter
- arginine/ornithine antiporter
- Arginine/ornithine antiporter ArcD
- arginine/ornithine APC transporter
- C4-dicarboxylate anaerobic carrier
- C4-dicarboxylate anaerobic carrier DcuC
- citrate transporter family protein
- dctM-like transporters family protein
- membrane protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3782855..3783681
- synteny block?: BlockID0025120
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1127 (arcD)
08BA02176:
C248_1197
11819-97:
MS7_1126
6850:
RSAU_001051
71193:
ST398NM01_1165
ECT-R 2:
ECTR2_1025
ED133:
SAOV_1169
ED98:
SAAV_1139
HO 5096 0412:
SAEMRSA15_10020
JH1:
SaurJH1_1254
JH9:
SaurJH9_1229
JKD6008:
SAA6008_01123
JKD6159:
SAA6159_01021
LGA251:
SARLGA251_10800
M013:
M013TW_1102
MRSA252:
SAR1144
MSHR1132:
SAMSHR1132_10120
MSSA476:
SAS1104
Mu3:
SAHV_1161
Mu50:
SAV1171
MW2:
MW1052
RF122:
SAB1035
ST398:
SAPIG1165
T0131:
SAT0131_01215
TCH60:
HMPREF0772_12063
TW20:
SATW20_11630
USA300_TCH1516:
USA300HOU_1108 (arcD2)
VC40:
SAVC_05005
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MENTINESEKKKRFKLKMPGAFMILFILTVVAVIATWVIPAGAYSKLSYEPSSQELKIVN
N315 MENTINESEKKKRFKLKMPGAFMILFILTVVAVIATWVIPAGAYSKLSYEPSSQELKIVN
NCTC8325 ----------------------MILFILTVVAVIATWVIPAGAYSKLSYEPSSQELKIVN
Newman MENTINESEKKKRFKLKMPGAFMILFILTVVAVIATWVIPAGAYSKLSYEPSSQELKIVN
USA300_FPR3757 MENTINESEKKKRFKLKMPGAFMILFILTVVAVIATWVIPAGAYSKLSYEPSSQELKIVN
**************************************
COL PHNQVKKVPGTQQELDKMGVKIKIEQFKSGAINKPVSIPNTYERLKQHPAGPEQITSSMV
N315 PHNQVKKVPGTQQELDKMGVKIKIEQFKSGAINKPVSIPNTYERLKQHPAGPEQITSSMV
NCTC8325 PHNQVKKVPGTQQELDKMGVKIKIEQFKSGAINKPVSIPNTYERLKQHPAGPEQITSSMV
Newman PHNQVKKVPGTQQELDKMGVKIKIEQFKSGAINKPVSIPNTYERLKQHPAGPEQITSSMV
USA300_FPR3757 PHNQVKKVPGTQQELDKMGVKIKIEQFKSGAINKPVSIPNTYERLKQHPAGPEQITSSMV
************************************************************
COL EGTIEAVDIMVFILVLGGLIGVVQASGSFESGLLALTKKTKGHEFMLIVFVSILMIIGGT
N315 EGTIEAVDIMVFILVLGGLIGVVQASGSFESGLLALTKKTKGHEFMLIVFVSILMIIGGT
NCTC8325 EGTIEAVDIMVFILVLGGLIGVVQASGSFESGLLALTKKTKGHEFMLIVFVSILMIIGGT
Newman EGTIEAVDIMVFILVLGGLIGVVQASGSFESGLLALTKKTKGHEFMLIVFVSILMIIGGT
USA300_FPR3757 EGTIEAVDIMVFILVLGGLIGVVQASGSFESGLLALTKKTKGHEFMLIVFVSILMIIGGT
************************************************************
COL LCGIEEEAVAFYPILVPIFIALGYDSIVSVGAIFLASSVGSTFSTINPFSVVIASNAAGT
N315 LCGIEEEAVAFYPILVPIFIALGYDSIVSVGAIFLASSVGSTFSTINPFSVVIASNAAGT
NCTC8325 LCGIEEEAVAFYPILVPIFIALGYDSIVSVGAIFLASSVGSTFSTINPFSVVIASNAAGT
Newman LCGIEEEAVAFYPILVPIFIALGYDSIVSVGAIFLASSVGSTFSTINPFSVVIASNAAGT
USA300_FPR3757 LCGIEEEAVAFYPILVPIFIALGYDSIVSVGAIFLASSVGSTFSTINPFSVVIASNAAGT
************************************************************
COL TFTDGLYWRIGACIVGAIFVISYLYWYCKKIKNDPKASYSYEDKDAFEQQWSVLKDDDSA
N315 TFTDGLYWRIGACIVGAIFVISYLYWYCKTIKNDPKASYSYEDKDAFEQQWSVLKDDDSA
NCTC8325 TFTDGLYWRIGACIVGAIFVISYLYWYCKKIKNDPKASYSYEDKDAFEQQWSVLKDDDSA
Newman TFTDGLYWRIGACIVGAIFVISYLYWYCKKIKNDPKASYSYEDKDAFEQQWSVLKDDDSA
USA300_FPR3757 TFTDGLYWRIGACIVGAIFVISYLYWYCKKIKNDPKASYSYEDKDAFEQQWSVLKDDDSA
*****************************.******************************
COL HFTLRKKIILTLFVLPFPIMVWGVMTQGWWFPVMASAFLIFTIIIMFIAGTGKSGLGEKG
N315 HFTLRKKIILTLFVLPFPIMVWGVMTQGWWFPVMASAFLIFTIIIMFIAGTGKSGLGEKG
NCTC8325 HFTLRKKIILTLFVLPFPIMVWGVMTQGWWFPVMASAFLIFTIIIMFIAGTGKSGLGEKG
Newman HFTLRKKIILTLFVLPFPIMVWGVMTQGWWFPVMASAFLIFTIIIMFIAGTGKSGLGEKG
USA300_FPR3757 HFTLRKKIILTLFVLPFPIMVWGVMTQGWWFPVMASAFLIFTIIIMFIAGTGKSGLGEKG
************************************************************
COL TVDAFVNGASSLVGVSLIIGLARGINLVLNEGMISDTILHFSSSLVQHMSGPLFIIVLLF
N315 TVDAFVNGASSLVGVSLIIGLARGINLVLNEGMISDTILHFSSSLVQHMSGPLFIIVLLF
NCTC8325 TVDAFVNGASSLVGVSLIIGLARGINLVLNEGMISDTILHFSSSLVQHMSGPLFIIVLLF
Newman TVDAFVNGASSLVGVSLIIGLARGINLVLNEGMISDTILHFSSSLVQHMSGPLFIIVLLF
USA300_FPR3757 TVDAFVNGASSLVGVSLIIGLARGINLVLNEGMISDTILHFSSSLVQHMSGPLFIIVLLF
************************************************************
COL IFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMAT
N315 IFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMAT
NCTC8325 IFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMAT
Newman IFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMAT
USA300_FPR3757 IFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMAT
************************************************************
COL LQMLNMRYSHWFRFVWPVVAFVLIFGGGVLITQVLIYS
N315 LQMLNMRYSHWFRFVWPVVAFVLIFGGGVLITQVLIYS
NCTC8325 LQMLNMRYSHWFRFVWPVVAFVLIFGGGVLITQVLIYS
Newman LQMLNMRYSHWFRFVWPVVAFVLIFGGGVLITQVLIYS
USA300_FPR3757 LQMLNMRYSHWFRFVWPVVAFVLIFGGGVLITQVLIYS
**************************************