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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003442000
- symbol?: —
- synonym:
- description?: noncanonical pyrimidine nucleotidase, YjjG family
- noncanonical pyrimidine nucleotidase, YjjG family
- HAD superfamily hydrolase
- 2-haloalkanoic acid dehalogenase
- 5'-nucleotidase
- 5-nucleotidase YjjG
- 5'-ribonucleotide phosphohydrolase
- HAD family hydrolase
- HAD superfamily (subfamily IA) hydrolase
- haloacid dehalgenase-like hydrolase
- haloacid dehalogenase
- haloacid dehalogenase-like family hydrolase
- putative HAD-hydrolase yfnB
- putative haloacid dehalogenase-like hydrolase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3788805..3789501
- synteny block?: BlockID0025230
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1133 (yjjG)
08BA02176:
C248_1204
11819-97:
MS7_1132 (yfnB)
6850:
RSAU_001056
71193:
ST398NM01_1172
ECT-R 2:
ECTR2_1031
ED133:
SAOV_1176
ED98:
SAAV_1146
HO 5096 0412:
SAEMRSA15_10080
JH1:
SaurJH1_1259
JH9:
SaurJH9_1234
JKD6008:
SAA6008_01129
JKD6159:
SAA6159_01026
LGA251:
SARLGA251_10860
M013:
M013TW_1109
MRSA252:
SAR1151
MSHR1132:
SAMSHR1132_10170
MSSA476:
SAS1109
Mu3:
SAHV_1165
Mu50:
SAV1175
MW2:
MW1058
RF122:
SAB1039
ST398:
SAPIG1172
T0131:
SAT0131_01220 (rpsQ)
TCH60:
HMPREF0772_12057
TW20:
SATW20_11690
USA300_TCH1516:
USA300HOU_1114
VC40:
SAVC_05035
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MGKLGYKNILIDFDDTIVDFYDAEEWAFHYMANVFNHKATKDDFLTFKKINHQHWEAFQQ
N315 ---MGYKNILIDFDDTIVDFYDAEEWAFHYMANVFNHKATKDDFLTFKKINHQHWEAFQQ
NCTC8325 MGKLGYKNILIDFDDTIVDFYDAEEWAFHYMANVFNHKATKDDFLTFKKINHQHWEAFQQ
Newman MGKLGYKNILIDFDDTIVDFYDAEEWAFHYMANVFNHKATKDDFLTFKKINHQHWEAFQQ
USA300_FPR3757 MGKLGYKNILIDFDDTIVDFYDAEEWAFHYMANVFNHKATKDDFLTFKKINHQHWEAFQQ
:********************************************************
COL NKLTKSEVLSERFVNYFKHHQMEVDGHRADVLFRNGLAEAKVKYFDQTLETIVELSKRHD
N315 NKLTKSEVLSERFVNYFKHHQMEVDGHRADVLFRNGLAEAKVKYFDQTLETIVELSKRHD
NCTC8325 NKLTKSEVLSERFVNYFKHHQMEVDGHRADVLFRNGLAEAKVKYFDQTLETIVELSKRHD
Newman NKLTKSEVLSERFVNYFKHHQMEVDGHRADVLFRNGLAEAKVKYFDQTLETIVELSKRHD
USA300_FPR3757 NKLTKSEVLSERFVNYFKHHQMEVDGHRADVLFRNGLAEAKVKYFDQTLETIVELSKRHD
************************************************************
COL LYIVTNGVTETQKRRLNQTPLHKYIKKIFISEETGYQKPNPEFFNYVFNDIGEDERQHSI
N315 LYIVTNGVTETQKRRLNQTPLHKYIKKIFISEETGYQKPNPEFFNYVFNDIGEDERQHSI
NCTC8325 LYIVTNGVTETQKRRLNQTPLHKYIKKIFISEETGYQKPNPEFFNYVFNDIGEDERQHSI
Newman LYIVTNGVTETQKRRLNQTPLHKYIKKIFISEETGYQKPNPEFFNYVFNDIGEDERQHSI
USA300_FPR3757 LYIVTNGVTETQKRRLNQTPLHKYIKKIFISEETGYQKPNPEFFNYVFNDIGEDERQHSI
************************************************************
COL IVGDSLTSDILGGINAGIATCWFNFRGFDHNPGIIPDYEINSWKQLNDIVR
N315 IVGDSLTSDILGGINAGIATCWFNFRGFDHNPGIIPDYEINSWKQLNDIVR
NCTC8325 IVGDSLTSDILGGINAGIATCWFNFRGFDHNPGIIPDYEINSWKQLNDIVR
Newman IVGDSLTSDILGGINAGIATCWFNFRGFDHNPGIIPDYEINSWKQLNDIVR
USA300_FPR3757 IVGDSLTSDILGGINAGIATCWFNFRGFDHNPGIIPDYEINSWKQLNDIVR
***************************************************