PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003472000
• symbol^?: —
• synonym:
• description^?: putative transposase

  descriptions from strain specific annotations:

  • putative transposase
  • transposase
  • pseudogene
  • transposase DDE domain protein
  • truncated transposase
• strand^?: +
• coordinates^?: 3812221..3814283
• synteny block^?: BlockID0025520
• occurrence^?: in 58% of 33 strains

⊟Orthologs

COL:
—
N315:
SA1038 (tnp)
NCTC8325:
SAOUHSC_01161
Newman:
NWMN_1106
USA300_FPR3757:
—
04-02981:
SA2981_1153
08BA02176:
—
11819-97:
MS7_1152
6850:
RSAU_001076
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_10280
JH1:
SaurJH1_1279
JH9:
SaurJH9_1254
JKD6008:
SAA6008_01149
JKD6159:
—
LGA251:
SARLGA251_11060
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS1129
Mu3:
SAHV_1185
Mu50:
SAV1195 (truncated-tnp)
MW2:
MW1078 (tnp)
RF122:
—
ST398:
—
T0131:
SAT0131_01242 (metE)
TCH60:
—
TW20:
SATW20_11890
USA300_TCH1516:
USA300HOU_1132
VC40:
SAVC_05140

⊟Genome Viewer

N315
NCTC8325
Newman

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  N315            MLSFTRMSVRGINKVKRELGFVLMALNIRKIAAQRAVHYKIHIKKADFYQIINRNQLFTL
  NCTC8325        -MSFTRMSVRGINKVKRELGFVLMAINIRKIAAQRAVHYKIHIKKADFYQIINRNQLFTL
  Newman          -MSFTRMSVRGINKVKRELGFVLMAINIRKIAAQRAVHYKIHIKKADFYQIINRNQLFTL
                   :***********************:**********************************
  
  N315            PKNLMSQPPS
  NCTC8325        PKNLMSQPPS
  Newman          PKNLMSQPPS
                  **********