PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003685000
• symbol^?: —
• synonym:
• description^?: ABC transporter ATP-binding protein

  descriptions from strain specific annotations:

  • ABC transporter ATP-binding protein
  • ABC superfamily ATP binding cassette transporter, ABC protein
  • ABC transporter family protein
• strand^?: +
• coordinates^?: 3993216..3993733
• synteny block^?: BlockID0027510
• occurrence^?: in 76% of 33 strains

⊟Orthologs

COL:
SACOL1352
N315:
SA1156
NCTC8325:
SAOUHSC_01311
Newman:
NWMN_1231
USA300_FPR3757:
SAUSA300_1217
04-02981:
SA2981_1274
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
ECTR2_1178
ED133:
SAOV_1332
ED98:
SAAV_1298
HO 5096 0412:
SAEMRSA15_11660
JH1:
SaurJH1_1407
JH9:
SaurJH9_1380
JKD6008:
SAA6008_01283
JKD6159:
SAA6159_01186
LGA251:
—
M013:
—
MRSA252:
SAR1329
MSHR1132:
SAMSHR1132_11640
MSSA476:
SAS1259
Mu3:
SAHV_1307
Mu50:
SAV1318
MW2:
MW1206
RF122:
—
ST398:
—
T0131:
SAT0131_01386
TCH60:
HMPREF0772_11889
TW20:
SATW20_13210
USA300_TCH1516:
USA300HOU_1263
VC40:
SAVC_05835

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MIKLIQISNINKSFNKRCVLKNISFDIEQGKCIALIGKNGAGKSTLIDILIGNVNANSGE
  N315            ---MIQISNINKSFNKRCVLKNISFDIEQGKCIALIGKNGAGKSTLIDILIGNVNANSGE
  NCTC8325        MIKLIQISNINKSFNKRCVLKNISFDIEQGKCIALIGKNGAGKSTLIDILIGNVNANSGE
  Newman          MIKLIQISNINKSFNKRCVLKNISFDIEQGKCIALIGKNGAGKSTLIDILIGNVNANSGE
  USA300_FPR3757  MIKLIQISNINKSFNKRCVLKNISFDIEQGKCIALIGKNGAGKSTLIDILIGNVNANSGE
                     :********************************************************
  
  COL             IFDKDKLLQSENRSIMFQKTMFPDQLKVIEIINLYQSFYENPLPLEEIIELTKFDSSQLN
  N315            IFDKDKLLQSENRSIMFQKTMFPDQLKVIEIINLYQSFYENPLPLEEIIELTKFDSSQLN
  NCTC8325        IFDKDKLLQSENRSIMFQKTMFPDQLKVIEIINLYQSFYENPLPLEEIIELTKFDSSQLN
  Newman          IFDKDKLLQSENRSIMFQKTMFPDQLKVIEIINLYQSFYENPLPLEEIIELTKFDSSQLN
  USA300_FPR3757  IFDKDKLLQSENRSIMFQKTMFPDQLKVIEIINLYQSFYENPLPLEEIIELTKFDSSQLN
                  ************************************************************
  
  COL             QFVNKLSGGQQRLLDFVLSLIGQPQLILLDEPTSTMDIEIREYFWSIIENLKEDNRTILY
  N315            QFVNKLSGGQQRLLDFVLSLIGQPQLILLDEPTSTMDIEIREYFWSIIENLKEDNRTILY
  NCTC8325        QFVNKLSGGQQRLLDFVLSLIGQPQLILLDEPTSTMDIEIREYFWSIIENLKEDNRTILY
  Newman          QFVNKLSGGQQRLLDFVLSLIGQPQLILLDEPTSTMDIEIREYFWSIIENLKEDNRTILY
  USA300_FPR3757  QFVNKLSGGQQRLLDFVLSLIGQPQLILLDEPTSTMDIEIREYFWSIIENLKEDNRTILY
                  ************************************************************
  
  COL             TSHYIEEVERMSDKIILIENGEIILNDSTSHIRTNQQSQITLSDEYIRKLKLDKDDLVIQ
  N315            TSHYIEEVERMSDKIILIENGEIILNDSTSHIRTNQQSQITLSDEYIRKLKLDKDDLVIQ
  NCTC8325        TSHYIEEVERMSDKIILIENGEIILNDSTSHIRTNQQSQITLSDEYIRKLKLDKDDLVIQ
  Newman          TSHYIEEVERMSDKIILIENGEIILNDSTSHIRTNQQSQITLSDEYIRKLKLDKDDLVIQ
  USA300_FPR3757  TSHYIEEVERMSDKIILIENGEIILNDSTSHIRTNQQSQITLSDEYIRKLKLDKDDLVIQ
                  ************************************************************
  
  COL             KNHNGTIKIITSNVNDTILYLQQLHINLDDIEIQKVSIVDSYFNNKKQRGSNYDTKLLEN
  N315            KNHNGTIKIITSNVNDTILYLQQLHINLDDIEIQKVSIVDSYFNNKKQRGSNYDTKLLEN
  NCTC8325        KNHNGTIKIITSNVNDTILYLQQLHINLDDIEIQKVSIVDSYFNNKKQRGSNYDTKLLEN
  Newman          KNHNGTIKIITSNVNDTILYLQQLHINLDDIEIQKVSIVDSYFNNKKQRGSNYDTKLLEN
  USA300_FPR3757  KNHNGTIKIITSNVNDTILYLQQLHINLDDIEIQKVSIVDSYFNNKKQRGSNYDTKLLEN
                  ************************************************************
  
  COL             RI
  N315            RI
  NCTC8325        RI
  Newman          RI
  USA300_FPR3757  RI
                  **