PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003690000
• symbol^?: —
• synonym:
• description^?: DNA-binding response regulator

  descriptions from strain specific annotations:

  • DNA-binding response regulator
  • LuxR family DNA-binding response regulator
  • two-component response regulator
  • response regulator protein
  • response regulator receiver
  • two component LuxR family transcriptional regulator
• strand^?: +
• coordinates^?: 3996999..3998404
• synteny block^?: BlockID0027560
• occurrence^?: in 76% of 33 strains

⊟Orthologs

COL:
SACOL1355
N315:
SA1159
NCTC8325:
SAOUHSC_01314
Newman:
NWMN_1234
USA300_FPR3757:
SAUSA300_1220
04-02981:
SA2981_1277
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
ECTR2_1181
ED133:
SAOV_1335
ED98:
SAAV_1301
HO 5096 0412:
SAEMRSA15_11690
JH1:
SaurJH1_1410
JH9:
SaurJH9_1383
JKD6008:
SAA6008_01286
JKD6159:
SAA6159_01189
LGA251:
—
M013:
—
MRSA252:
SAR1332
MSHR1132:
SAMSHR1132_11670
MSSA476:
SAS1262
Mu3:
SAHV_1311
Mu50:
SAV1322
MW2:
MW1209
RF122:
—
ST398:
—
T0131:
SAT0131_01390
TCH60:
HMPREF0772_11886
TW20:
SATW20_13240
USA300_TCH1516:
USA300HOU_1266
VC40:
SAVC_05850

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIEMPGM
  N315            MTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIEMPGM
  NCTC8325        MTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIEMPGM
  Newman          MTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIEMPGM
  USA300_FPR3757  MTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVFLDIEMPGM
                  ***************************************************:********
  
  COL             TGLEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNN
  N315            TGLEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNN
  NCTC8325        TGLEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNN
  Newman          TGLEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNN
  USA300_FPR3757  TGLEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNN
                  ************************************************************
  
  COL             GEKEYSATLMTSFFVDKNPLTPKEQIVLREIGNGLSSKEISEKLFLTDGTVRNYTSVIID
  N315            GEKEYSATLMTSFFVDKNPLTPKEQIVLREIGNGLSSKEISEKLFLTDGTVRNYTSVIID
  NCTC8325        GEKEYSATLMTSFFVDKNPLTPKEQIVLREIGNGLSSKEISEKLFLTDGTVRNYTSVIID
  Newman          GEKEYSATLMTSFFVDKNPLTPKEQIVLREIGNGLSSKEISEKLFLTDGTVRNYTSVIID
  USA300_FPR3757  GEKEYSATLMTSFFVDKNPLTPKEQIVLREIGNGLSSKEISEKLFLTDGTVRNYTSVIID
                  ************************************************************
  
  COL             KLFADNRFDAWKKANEKGWI
  N315            KLFADNRFDAWKKANEKGWI
  NCTC8325        KLFADNRFDAWKKANEKGWI
  Newman          KLFADNRFDAWKKANEKGWI
  USA300_FPR3757  KLFADNRFDAWKKANEKGWI
                  ********************