PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003727000
• symbol^?: mscL
• synonym:
• description^?: large-conductance mechanosensitive channel

  descriptions from strain specific annotations:

  • large-conductance mechanosensitive channel
  • large conductance mechanosensitive channel protein
  • large conductance mechanosensitive channel protein MscL
  • pseudogene
• strand^?: -
• coordinates^?: 4027354..4027723
• synteny block^?: BlockID0027920
• occurrence^?: in 94% of 33 strains

⊟Orthologs

COL:
SACOL1383 (mscL)
N315:
SA1182 (mscL)
NCTC8325:
—
Newman:
NWMN_1260 (mscL)
USA300_FPR3757:
SAUSA300_1244 (mscL)
04-02981:
SA2981_1302 (mscL)
08BA02176:
C248_1383 (mscL)
11819-97:
MS7_1306 (mscL)
6850:
RSAU_001230 (mscL)
71193:
ST398NM01_1349
ECT-R 2:
ECTR2_1206 (mscL)
ED133:
SAOV_1360c
ED98:
SAAV_1328 (mscL)
HO 5096 0412:
SAEMRSA15_11940 (mscL)
JH1:
SaurJH1_1436 (mscL)
JH9:
SaurJH9_1409 (mscL)
JKD6008:
SAA6008_01313 (mscL)
JKD6159:
SAA6159_01214 (mscL)
LGA251:
SARLGA251_12560 (mscL)
M013:
M013TW_1295
MRSA252:
SAR1360 (mscL)
MSHR1132:
SAMSHR1132_11920
MSSA476:
SAS1287 (mscL)
Mu3:
SAHV_1336 (mscL)
Mu50:
SAV1347 (mscL)
MW2:
MW1235 (mscL)
RF122:
SAB1205c (mscL)
ST398:
SAPIG1349 (mscL)
T0131:
SAT0131_01419
TCH60:
HMPREF0772_11861 (mscL)
TW20:
SATW20_13490 (mscL)
USA300_TCH1516:
—
VC40:
SAVC_05975 (mscL)

⊟Genome Viewer

COL
N315
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             -------------------------MLKEFKEFALKGNVLDLAIAVVMGAAFNKIISSLV
  N315            -------------------------MLKEFKEFALKGNVLDLAIAVVMGAAFNKIISSLV
  Newman          -------------------------MLKEFKEFALKGNVLDLAIAVVMGAAFNKIISSLV
  USA300_FPR3757  MNNLFSNFFICCIIEVTFKKERLSVMLKEFKEFALKGNVLDLAIAVVMGAAFNKIISSLV
                                           ***********************************
  
  COL             ENIIMPLIGKIFGSVDFAKEWSFWGIKYGLFIQSVIDFIIIAFALFIFVKIANTLMKKEE
  N315            ENIIMPLIGKIFGSVDFAKEWSFWGIKYGLFIQSVIDFIIIAFALFIFVKIANTLMKKEE
  Newman          ENIIMPLIGKIFGSVDFAKEWSFWGIKYGLFIQSVIDFIIIAFALFIFVKIANTLMKKEE
  USA300_FPR3757  ENIIMPLIGKIFGSVDFAKEWSFWGIKYGLFIQSVIDFIIIAFALFIFVKIANTLMKKEE
                  ************************************************************
  
  COL             AEEEAVVEENVVLLTEIRDLLREKK
  N315            AEEEAVVEENVVLLTEIRDLLREKK
  Newman          AEEEAVVEENVVLLTEIRDLLREKK
  USA300_FPR3757  AEEEAVVEENVVLLTEIRDLLREKK
                  *************************