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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003746000
- symbol?: glcT
- synonym:
- description?: transcription antiterminator
- transcription antiterminator
- protein GlcT
- transcriptional antiterminator
- BglG family transcription antiterminator
- CAT RNA-binding domain-containing protein
- CAT RNA binding domain protein
- PRD domain-containing protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 4045979..4046839
- synteny block?: BlockID0028090
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1311 (glcT)
08BA02176:
C248_1394
11819-97:
MS7_1315
6850:
RSAU_001239 (glcT)
71193:
ST398NM01_1359
ECT-R 2:
ECTR2_1215
ED133:
SAOV_1369
ED98:
SAAV_1338
HO 5096 0412:
SAEMRSA15_12050
JH1:
SaurJH1_1446
JH9:
SaurJH9_1419
JKD6008:
SAA6008_01323 (glcT)
JKD6159:
SAA6159_01223 (glcT)
LGA251:
SARLGA251_12670
M013:
M013TW_1304
MRSA252:
SAR1369
MSHR1132:
SAMSHR1132_12010
MSSA476:
SAS1297
Mu3:
SAHV_1345 (glcT)
Mu50:
SAV1357 (glcT)
MW2:
MW1244 (glcT)
RF122:
SAB1214
ST398:
SAPIG1359
T0131:
SAT0131_01428
TCH60:
HMPREF0772_11852 (glcT)
TW20:
SATW20_13580
USA300_TCH1516:
USA300HOU_1291 (glcT)
VC40:
SAVC_06030
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL ---MGEYIVTKTLNNNVVVCTNNDQEVILIGKGIGFNKKEGMALNDQTITIEKIYKLESE
N315 ---MGEYIVTKTLNNNVVVCTNNDQEVILIGKGIGFNKKEGMALNDQTITIEKIYKLESE
NCTC8325 ---MGEYIVTKTLNNNVVVCTNNDQEVILIGKGIGFNKKEGMALNDQTITIEKIYKLESE
Newman ---MGEYIVTKTLNNNVVVCTNNDQEVILIGKGIGFNKKEGMALNDQTITIEKIYKLESE
USA300_FPR3757 MMIMGEYIVTKTLNNNVVVCTNNDQEVILIGKGIGFNKKEGMALNDQTITIEKIYKLESE
*********************************************************
COL QQKAHYKSLVEIADDNVLQVIIDSLNFISNTAMNVDSKQLVVSLTDHIIFAYKRLKQNQV
N315 QQKAHYKSLVEIADDNVLQVIIDSLNFISNTAMNVDSKQLVVSLTDHIIFAYKRLKQNQV
NCTC8325 QQKAHYKSLVEIADDNVLQVIIDSLNFISNTAMNVDSKQLVVSLTDHIIFAYKRLKQNQV
Newman QQKAHYKSLVEIADDNVLQVIIDSLNFISNTAMNVDSKQLVVSLTDHIIFAYKRLKQNQV
USA300_FPR3757 QQKAHYKSLVEIADDNVLQVIIDSLNFISNTAMNVDSKQLVVSLTDHIIFAYKRLKQNQV
************************************************************
COL ISNPFVMETMQLYSDAYHIAKQVIDQLNAALDVHFPEDEIGFIALHIASNTEDLSMHEMT
N315 ISNPFVMETMQLYSDAYHIAKQVIDQLNAALDVHFPEDEIGFIALHIASNTEDLSMHEMT
NCTC8325 ISNPFVMETMQLYSDAYHIAKQVIDQLNAALDVHFPEDEIGFIALHIASNTEDLSMHEMT
Newman ISNPFVMETMQLYSDAYHIAKQVIDQLNAALDVHFPEDEIGFIALHIASNTEDLSMHEMT
USA300_FPR3757 ISNPFVMETMQLYSDAYHIAKQVIDQLNAALDVHFPEDEIGFIALHIASNTEDLSMHEMT
************************************************************
COL LINNVIKKGIDIIESDLVTTVDKESLQYQRFIRHVQFLIRRLRRKEYIHAQDDFVSMIKN
N315 LINNVIKKGIDIIESDLVTTVDKESLQYQRFIRHVQFLIRRLRRKEYIHAQDDFVSMIKN
NCTC8325 LINNVIKKGIDIIESDLVTTVDKESLQYQRFIRHVQFLIRRLRRKEYIHAQDDFVSMIKN
Newman LINNVIKKGIDIIESDLVTTVDKESLQYQRFIRHVQFLIRRLRRKEYIHAQDDFVSMIKN
USA300_FPR3757 LINNVIKKGIDIIESDLVTTVDKESLQYQRFIRHVQFLIRRLRRKEYIHAQDDFVSMIKN
************************************************************
COL HYPICYNTAYKILTMIQKQFDVNISESEIIYLTLHIHHFEERINQS
N315 HYPICYNTAYKILTMIQKQFDVNISESEIIYLTLHIHHFEERINQS
NCTC8325 HYPICYNTAYKILTMIQKQFDVNISESEIIYLTLHIHHFEERINQS
Newman HYPICYNTAYKILTMIQKQFDVNISESEIIYLTLHIHHFEERINQS
USA300_FPR3757 HYPICYNTAYKILTMIQKQFDVNISESEIIYLTLHIHHFEERINQS
**********************************************