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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003802000
- symbol?: —
- synonym:
- description?: transposase
- transposase
- putative transposase
- putative transposase for IS1272
- truncated IS1272 transposase
- pseudogene
- transposase for IS1272
- truncated transposase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 4092514..4092811
- synteny block?: BlockID0028590
- occurrence?: in 67% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1344
08BA02176:
C248_1429
11819-97:
—
6850:
RSAU_002352
71193:
ST398NM01_1391
ECT-R 2:
ECTR2_1247
ED133:
—
ED98:
SAAV_1372
HO 5096 0412:
—
JH1:
SaurJH1_1480
JH9:
SaurJH9_1451
JKD6008:
SAA6008_01354
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS1331
Mu3:
SAHV_1378
Mu50:
SAV1390
MW2:
MW1278 (tnp)
RF122:
—
ST398:
SAPIG1391
T0131:
SAT0131_01463 (bioB)
TCH60:
—
TW20:
SATW20_13890
USA300_TCH1516:
USA300HOU_1325
VC40:
SAVC_06195
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKYIKAQINQKLSEPETKKIYSHRKIYVEPVFGFMKAILGFTRMSVRGINKVKRELGFVL
N315 MKYIKAQINQKLSEPETKKIYSHRKIYVEPVFGFMKVILGFTRMSVRGINKVKRELGFVL
NCTC8325 MKYIKAQINQKLSEPETKKIYSHRKIYVEPVFGFMKAILGFTRMSVRGINKVKRELGFVL
Newman MKYIKAQINQKLSEPETKKIYSHRKIYVEPVFGFMKAILGFTRMSVRGINKVKRELGFVL
************************************.***********************
COL MALNIRKIAAQRAVHYKIHIKKADFHQIINRNQLFYIA
N315 MALNIRKIAAQRAVHYKIHIKKANFHQIINRNQLFYIA
NCTC8325 MALNIRKIAAQRAVHYKIHIKKADFHQIINRNQLFYIA
Newman MALNIRKIAAQRAVHYKIHIKKADFHQIINRNQLFYIA
***********************:**************