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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003894000
- symbol?: —
- synonym:
- description?: 5'-3' exonuclease
- 5'-3' exonuclease
- 5'-3' exonuclease, putative
- putative 5'-3' exonuclease
- 5'-3' exonuclease, C-terminal SAM fold family protein
- DNA polymerase I
- probable 5'-3' exonuclease
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4215889..4216767
- synteny block?: BlockID0029400
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1395
08BA02176:
C248_1479
11819-97:
MS7_1396 (ypcP)
6850:
RSAU_001313
71193:
ST398NM01_1439
ECT-R 2:
ECTR2_1294
ED133:
SAOV_1449
ED98:
SAAV_1424
HO 5096 0412:
SAEMRSA15_13020
JH1:
SaurJH1_1529
JH9:
SaurJH9_1500
JKD6008:
SAA6008_01408
JKD6159:
SAA6159_01305
LGA251:
SARLGA251_13550
M013:
M013TW_1387
MRSA252:
SAR1452
MSHR1132:
SAMSHR1132_12810
MSSA476:
SAS1383
Mu3:
SAHV_1428
Mu50:
SAV1440
MW2:
MW1329
RF122:
SAB1305c
ST398:
SAPIG1439
T0131:
SAT0131_01528
TCH60:
HMPREF0772_11766
TW20:
SATW20_14400
USA300_TCH1516:
USA300HOU_1377
VC40:
SAVC_06455
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MPNKILLVDGMALLFRHFYATSLHKQFMYNSQGEPTNGIQGFVRHIFSAIHEIRPTHVAV
N315 MPNKILLVDGMALLFRHFYATSLHKQFMYNSQGVPTNGIQGFVRHIFSAIHEIRPTHVAV
NCTC8325 MPNKILLVDGMALLFRHFYATSLHKQFMYNSQGEPTNGIQGFVRHIFSAIHEIRPTHVAV
Newman MPNKILLVDGMALLFRHFYATSLHKQFMYNSQGEPTNGIQGFVRHIFSAIHEIRPTHVAV
USA300_FPR3757 MPNKILLVDGMALLFRHFYATSLHKQFMYNSQGEPTNGIQGFVRHIFSAIHEIRPTHVAV
********************************* **************************
COL CWDMGQSTFRNDMFDGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVKNYEADDVIGT
N315 CWDMGQSTFRNDMFDGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVKNYEADDVIGT
NCTC8325 CWDMGQSTFRNDMFDGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVKNYEADDVIGT
Newman CWDMGQSTFRNDMFDGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVKNYEADDVIGT
USA300_FPR3757 CWDMGQSTFRNDMFDGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVKNYEADDVIGT
************************************************************
COL LAQQYSTDNDVYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLHRFNEEYALEPQQLI
N315 LAQQYSTDNDVYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLHRFNEEYALEPQQLI
NCTC8325 LAQQYSTDNDVYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLHRFNEEYALEPQQLI
Newman LAQQYSTDNDVYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLHRFNEEYALEPQQLI
USA300_FPR3757 LAQQYSTDNDVYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLHRFNEEYALEPQQLI
************************************************************
COL DIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDALSAGQRNKINDNLDELY
N315 DIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDALSAGQRNKINDNLDELY
NCTC8325 DIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDALSAGQRNKINDNLDELY
Newman DIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDALSAGQRNKINDNLDELY
USA300_FPR3757 DIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDALSAGQRNKINDNLDELY
************************************************************
COL LSKRLAEIHTQVPIDSEALFEKMSFATTLNHILSICNEHELHVSGKYISSHF
N315 LSKRLAEIHTQVPIDSEALFEKMSFATTLNHILSICNEHELHVSGKYISSHF
NCTC8325 LSKRLAEIHTQVPIDSEALFEKMSFATTLNHILSICNEHELHVSGKYISSHF
Newman LSKRLAEIHTQVPIDSEALFEKMSFATTLNHILSICNEHELHVSGKYISSHF
USA300_FPR3757 LSKRLAEIHTQVPIDSEALFEKMSFATTLNHILSICNEHELHVSGKYISSHF
****************************************************