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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004195000
- symbol?: —
- synonym:
- description?: Fic family protein
- Fic family protein
- fic/DOC family protein
- Fic protein family
- phage protein
- pseudogene
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4450648..4453201
- synteny block?: BlockID0032250
- occurrence?: in 94% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1561
08BA02176:
C248_1645
11819-97:
MS7_1619
6850:
RSAU_001465
71193:
ST398NM01_1667
ECT-R 2:
ECTR2_1452
ED133:
SAOV_1601
ED98:
SAAV_1594
HO 5096 0412:
SAEMRSA15_15210
JH1:
SaurJH1_1694
JH9:
SaurJH9_1660
JKD6008:
SAA6008_01573
JKD6159:
—
LGA251:
SARLGA251_15060
M013:
M013TW_1619
MRSA252:
SAR1682
MSHR1132:
SAMSHR1132_14400
MSSA476:
SAS1539
Mu3:
SAHV_1590
Mu50:
SAV1603
MW2:
MW1553
RF122:
SAB1474c
ST398:
SAPIG1667
T0131:
SAT0131_01699 (rplA)
TCH60:
HMPREF0772_11538
TW20:
—
USA300_TCH1516:
USA300HOU_1604
VC40:
SAVC_07265
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MGYRTLKSIFHEHNESKMKEEYIKRFNSLASFNTNINIIPMENGKKVNDLEYPLFFMVTK
N315 MGYRTLKSIFHEHNESKMKEEYTKRFNSLASFNTNINIIPMENGKKVNDLEYPLFFMVTK
NCTC8325 MGYRTLKSIFHEHNESKMKEEYIKRFNSLASFNTNINIIPMENGKKVNDLEYPLFFMVTK
Newman MGYRTLKSIFHEHNESKMKEEYIKRFNSLASFNTNINIIPMENGKKVNDLEYPLFFMVTK
USA300_FPR3757 MGYRTLKSIFHEHNESKMKEEYIKRFNSLASFNTNINIIPMENGKKVNDLEYPLFFMVTK
********************** *************************************
COL NLSKKQELISINSRKIDRALNSLPYAAREQYFNDLLIDELQSTNEIENVFSTKQEIAHAL
N315 NLSKKQELISINSRKIDRALNSLPYAAREQYFNDLLIDELQSTNEIENVFSTKQEIAHAL
NCTC8325 NLSKKQELISINSRKIDRALNSLPYAAREQYFNDLLIDELQSTNEIENVFSTKQEIAHAL
Newman NLSKKQELISINSRKIDRALNSLPYAAREQYFNDLLIDELQSTNEIENVFSTKQEIAHAL
USA300_FPR3757 NLSKKQELISINSRKIDRALNSLPYAAREQYFNDLLIDELQSTNEIENVFSTKQEIAHAL
************************************************************
COL NNQASEFLKFRGLVDQYKEIELNKKIKVDNVRDIRAIYDKLVSNEINEQDKLDGELFRKN
N315 NNQASEFLKFRGLVDQYKEIELNKKIKVDNVRDIRAIYDKLVSNEINEQDKLDGELFRKN
NCTC8325 NNQASEFLKFRGLVDQYKEIELNKKIKVDNVRDIRAIYDKLVSNEINEQDKLDGELFRKN
Newman NNQASEFLKFRGLVDQYKEIELNKKIKVDNVRDIRAIYDKLVSNEINEQDKLDGELFRKN
USA300_FPR3757 NNQASEFLKFRGLVDQYKEIELNKKIKVDNVRDIRAIYDKLVSNEINEQDKLDGELFRKN
************************************************************
COL FVGVHDGSTNKYIHVGLQPETKIVEFIGEMLTFLKYFDAPQPFKIMASHYLFEYIHPFYD
N315 FVGVHDGSTNKYIHVGLQPETKIVEYIGEMLTFLKYFDAPQPFKIMASHYLFEYIHPFYD
NCTC8325 FVGVHDGSTNKYIHVGLQPETKIVEFIGEMLTFLKYFDAPQPFKIMASHYLFEYIHPFYD
Newman FVGVHDGSTNKYIHVGLQPETKIVEFIGEMLTFLKYFDAPQPFKIMASHYLFEYIHPFYD
USA300_FPR3757 FVGVHDGSTNKYIHVGLQPETKIVEFIGEMLTFLKYFDAPQPFKIMASHYLFEYIHPFYD
*************************:**********************************
COL GNGRVGRFIIAKLLSDYYDNYTALTFSYVINRNKSKYYKAFMTASNHLNCGDLTEFIDTM
N315 GNGRVGRFIIAKLLSDYYDNYTALTFSYVINRNKSKYYKAFMTASNHLNCGDLTEFIDTM
NCTC8325 GNGRVGRFIIAKLLSDYYDNYTALTFSYVINRNKSKYYKAFMTASNHLNCGDLTEFIDTM
Newman GNGRVGRFIIAKLLSDYYDNYTALTFSYVINRNKSKYYKAFMTASNHLNCGDLTEFIDTM
USA300_FPR3757 GNGRVGRFIIAKLLSDYYDNYTALTFSYVINRNKSKYYKAFMTASNHLNCGDLTEFIDTM
************************************************************
COL LELLIAGQERILDELIPKMDATEKLTLYLTSHYKQIDYEFLYLLSMDKLFGNKRNRLTLI
N315 LELLIAGQERILDELIPKMDATEKLTLYLTSHYKQIDYEFLYLLSMDKLFGNKRNRLTLI
NCTC8325 LELLIAGQERILDELIPKMDATEKLTLYLTSHYKQIDYEFLYLLSMDKLFGNKRNRLTLI
Newman LELLIAGQERILDELIPKMDATEKLTLYLTSHYKQIDYEFLYLLSMDKLFGNKRNRLTLI
USA300_FPR3757 LELLIAGQERILDELIPKMDATEKLTLYLTSHYKQIDYEFLYLLSMDKLFGNKRNRLTLI
************************************************************
COL DLENILGVGRVKINNTIKKYDNYLVKIKSRPTIYEISDEFLNSIIK
N315 DLENILGVGRVKINNTIKKYDNYLVKIKSRPTIYEISDEFLNSIIK
NCTC8325 DLENILGVGRVKINNTIKKYDNYLVKIKSRPTIYEISDEFLNSIIK
Newman DLENILGVGRVKINNTIKKYDNYLVKIKSRPTIYEISDEFLNSIIK
USA300_FPR3757 DLENILGVGRVKINNTIKKYDNYLVKIKSRPTIYEISDEFLNSIIK
**********************************************