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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004448000
- symbol?: rot
- synonym:
- description?: accessory regulator Rot
- accessory regulator Rot
- MarR family transcriptional regulator
- repressor of toxins
- repressor of toxins Rot
- repressor of toxins transcriptional regulator Rot
- virulence factor regulator protein
- accessory regulator A-like protein
- HTH-type transcriptional regulator Rot
- HTH-type transcriptional regulator rot (Repressor of toxins)
- repressor of toxins, Rot
- repressor of toxins transcriptional regulator
- Staphylococcal accessory regulator
- Toxin repressor
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4695589..4695990
- synteny block?: BlockID0034450
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1720 (rot)
08BA02176:
C248_1809 (rot)
11819-97:
MS7_1768 (rot)
6850:
RSAU_001619 (rot)
71193:
ST398NM01_1815
ECT-R 2:
ECTR2_1602
ED133:
SAOV_1748
ED98:
SAAV_1773 (rot)
HO 5096 0412:
SAEMRSA15_16700 (rot)
JH1:
SaurJH1_1852
JH9:
SaurJH9_1817
JKD6008:
SAA6008_01734 (rot)
JKD6159:
SAA6159_01685 (rot)
LGA251:
SARLGA251_16520 (rot)
M013:
M013TW_1778
MRSA252:
SAR1847 (rot)
MSHR1132:
SAMSHR1132_16120
MSSA476:
SAS1688
Mu3:
SAHV_1750 (rot)
Mu50:
SAV1764 (rot)
MW2:
MW1705 (rot)
RF122:
SAB1622c (rot)
ST398:
SAPIG1815
T0131:
SAT0131_01874
TCH60:
HMPREF0772_11389 (rot)
TW20:
SATW20_17520 (rot)
USA300_TCH1516:
USA300HOU_1753 (rot)
VC40:
SAVC_08020
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MHKLAHTSFGIVGMFVNTCIVAKYVIINWEMFSMKKVNNDTVFGILQLETLLGDINSIFS
N315 -------------MFVNTCMVAKYVIINWEMFSMKKVNNDTVFGILQLETLLGDINSIFS
NCTC8325 ---------------------------------MKKVNNDTVFGILQLETLLGDINSIFS
Newman MHKLARTSFGIVGMFVNTCIVAKYVIINWEMFSMKKVNNDTVFGILQLETLLGDINSIFS
USA300_FPR3757 MHKLAHTSFGIVGMFVNTCIVAKYVIINWEMFSMKKVNNDTVFGILQLETLLGDINSIFS
***************************
COL EIESEYKMSREEILILLTLWQKGFMTLKEMDRFVEVKPYKRTRTYNNLVELEWIYKERPV
N315 EIESEYKMSREEILILLTLWQKGSMTLKEMDRFVEVKPYKRTRTYNNLVELEWIYKERPV
NCTC8325 EIESEYKMSREEILILLTLWQKGSMTLKEMDRFVEVKPYKRTRTYNNLVELEWIYKERPV
Newman EIESEYKMSREEILILLTLWQKGSMTLKEMDRFVEVKPYKRTRTYNNLVELEWIYKERPV
USA300_FPR3757 EIESEYKMSREEILILLTLWQKGSMTLKEMDRFVEVKPYKRTRTYNNLVELEWIYKERPV
*********************** ************************************
COL DDERTVIIHFNEKLQQEKVELLNFISDAIASRATAMQNSLNAIIAV
N315 DDERTVIIHFNEKLQQEKVELLNFISDAIASRATAMQNSLNAIIAV
NCTC8325 DDERTVIIHFNEKLQQEKVELLNFISDAIASRATAMQNSLNAIIAV
Newman DDERTVIIHFNEKLQQEKVELLNFISDAIASRATAMQNSLNAIIAV
USA300_FPR3757 DDERTVIIHFNEKLQQEKVELLNFISDAIASRATAMQNSLNAIIAV
**********************************************