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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004508000
- symbol?: rppH
- synonym:
- description?: nucleoside triphosphatase YtkD
- nucleoside triphosphatase YtkD
- MutT/nudix family protein
- Low G+C gram positive nudix hydrolase YtkD
- MutT/NUDIX hydrolase family protein
- NUDIX family hydrolase
- phosphohydrolase
- putative hydrolase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4738154..4738627
- synteny block?: BlockID0034990
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1749 (ytkD)
08BA02176:
C248_1838
11819-97:
MS7_1792 (ytkD)
6850:
RSAU_001646
71193:
ST398NM01_1841
ECT-R 2:
ECTR2_1628 (ytkD)
ED133:
SAOV_1774
ED98:
SAAV_1803
HO 5096 0412:
SAEMRSA15_17010
JH1:
SaurJH1_1880
JH9:
SaurJH9_1844
JKD6008:
SAA6008_01769
JKD6159:
SAA6159_01711
LGA251:
SARLGA251_16770
M013:
M013TW_1803
MRSA252:
SAR1874
MSHR1132:
SAMSHR1132_16380
MSSA476:
SAS1714
Mu3:
SAHV_1779
Mu50:
SAV1794
MW2:
MW1732
RF122:
SAB1648c
ST398:
SAPIG1841 (ytkD)
T0131:
SAT0131_01909
TCH60:
HMPREF0772_11363 (ytkD)
TW20:
SATW20_17830
USA300_TCH1516:
USA300HOU_1781
VC40:
SAVC_08180
⊟Genome Viewer[edit | edit source]
COL | |
N315 | |
NCTC8325 | |
Newman | |
USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MRVKFRDKDNRQVNLTFKKDNEIADGNHVLAIPTFKNQLLFTKHNLRGIEFPGGKRERGE
N315 MRVKFRDKDNRQVNLTFKKDNEIADGNHVLAIPTFKNQLLFTKHNLRGIEFPGGKRERGE
NCTC8325 --MKFRDKDNRQVNLTFKKDNEIADGNHVLAIPTFKNQLLFTKHNLRGIEFPGGKRERGE
Newman MRVKFRDKDNRQVNLTFKKDNEIADGNHVLAIPTFKNQLLFTKHNLRGIEFPGGKRERGE
USA300_FPR3757 MRVKFRDKDNRQVNLTFKKDNEIADGNHVLAIPTFKNQLLFTKHNLRGIEFPGGKRERGE
:*********************************************************
COL SSAEAVTRELYEETGAKVKNIYYIAQYTIETHDQTDFVKDVYFIEVESLVSKNDYLETAG
N315 SSAEAVTRELYEETGAKVKNIHYIAQYTIETHDQTDFVKDVYFIEVESLVSKNDYLETAG
NCTC8325 SSAEAVTRELYEETGAKVKNIYYIAQYTIETHDQTDFVKDVYFIEVESLVSKNDYLETAG
Newman SSAEAVTRELYEETGAKVKNIYYIAQYTIETHDQTDFVKDVYFIEVESLVSKNDYLETAG
USA300_FPR3757 SSAEAVTRELYEETGAKVKNIYYIAQYTIETHDQTDFVKDVYFIEVESLVSKNDYLETAG
*********************:**************************************
COL PVLFNCINDIELAQRSFLLQDSTILKCVERVQSLGFYQT
N315 PVLFNCINDIELAQRSFLLQDSTILKCVERVQSLGFYQT
NCTC8325 PVLFNCINDIELAQRSFLLQDSTILKCVERVQSLGFYQT
Newman PVLFNCINDIELAQRSFLLQDSTILKCVERVQSLGFYQT
USA300_FPR3757 PVLFNCINDIELAQRSFLLQDSTILKCVERVQSLGFYQT
***************************************