PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN004558000
• symbol^?: splF
• synonym:
• description^?: serine protease SplF

  descriptions from strain specific annotations:

  • serine protease SplF
  • serine proteinase
  • peptidase S1 and S6, chymotrypsin/Hap
  • peptidase S1 and S6 chymotrypsin/Hap
  • pseudogene
  • S1B family serine protease SplF
  • serine protease SplF, putative
• strand^?: -
• coordinates^?: 4789723..4790442
• synteny block^?: BlockID0035470
• occurrence^?: in 76% of 33 strains

⊟Orthologs

COL:
SACOL1864
N315:
SA1627 (splF)
NCTC8325:
SAOUHSC_01935
Newman:
NWMN_1701 (splF)
USA300_FPR3757:
SAUSA300_1753 (splF)
04-02981:
SA2981_1764 (splF)
08BA02176:
—
11819-97:
MS7_1809
6850:
RSAU_001666 (splF)
71193:
—
ECT-R 2:
ECTR2_1642
ED133:
SAOV_1795 (splF)
ED98:
SAAV_1817
HO 5096 0412:
—
JH1:
SaurJH1_1896
JH9:
SaurJH9_1861
JKD6008:
—
JKD6159:
—
LGA251:
SARLGA251_16910
M013:
—
MRSA252:
SAR1900 (splF)
MSHR1132:
—
MSSA476:
SAS1733
Mu3:
SAHV_1794 (splF)
Mu50:
SAV1809 (splF)
MW2:
MW1752 (splF)
RF122:
SAB1669c (splF)
ST398:
—
T0131:
SAT0131_01929 (saeR)
TCH60:
HMPREF0772_11334 (splF)
TW20:
SATW20_18060 (splF)
USA300_TCH1516:
USA300HOU_1801 (splF)
VC40:
SAVC_08280

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MNKNIIIKSIAALTILTSITGVGTTMVEGIQQTAKAENTVKQITNTNVAPYSGVTWMGAG
  N315            MNKNIIIKSIAALTILTSVTGVGTTMVEGIQQTAKAENTVKQITNTNVAPYSGVTWMGAG
  NCTC8325        MNKNIIIKSIAALTILTSITGVGTTMVEGIQQTAKAENTVKQITNTNVAPYSGVTWMGAG
  Newman          MNKNIIIKSIAALTILTSITGVGTTMVEGIQQTAKAENTVKQITNTNVAPYSGVTWMGAG
  USA300_FPR3757  MNKNIIIKSIGALTILTSITGVGTTMVEGIQQTAKAENTVKQITNTNVAPYSGVTWMGAG
                  **********.*******:*****************************************
  
  COL             TGFVVGNHTIITNKHVTYHMKVGDEIKAHPNGFYNNGGGLYKVTKIVDYPGKEDIAVVQV
  N315            TGFVVGNHTIITNKHVTYHMKVGDEIKAHPNGFYNNGGGLYKVTKIVDYPGKEDIAVVQV
  NCTC8325        TGFVVGNHTIITNKHVTYHMKVGDEIKAHPNGFYNNGGGLYKVTKIVDYPGKEDIAVVQV
  Newman          TGFVVGNHTIITNKHVTYHMKVGDEIKAHPNGFYNNGGGLYKVTKIVDYPGKEDIAVVQV
  USA300_FPR3757  TGFVVGNHTIITNKHVTYHMKVGDEIKAHPNGFYNNGGGLYKVTKIVDYPGKEDIAVVQV
                  ************************************************************
  
  COL             EEKSTQPKGRKFKDFTSKFNIASEAKENEPISVIGYPNPNGNKLQMYESTGKVLSVNGNI
  N315            EEKSTQPKGRKFKDFTSKFNIASEAKENEPISVIGYPNPNGNKLQMYESTGKVLSVNGNI
  NCTC8325        EEKSTQPKGRKFKDFTSKFNIASEAKENEPISVIGYPNPNGNKLQMYESTGKVLSVNGNI
  Newman          EEKSTQPKGRKFKDFTSKFNIASEAKENEPISVIGYPNPNGNKLQMYESTGKVLSVNGNI
  USA300_FPR3757  EEKSTQPKGRKFKDFTSKFNIASEAKENEPISVIGYPNPNGNKLQMYESTGKVLSVNGNI
                  ************************************************************
  
  COL             VSSDAIIQPGSSGSPILNSKHEAIGVIYAGNKPSGESTRGFAVYFSPEIKKFIADNLDK
  N315            VSSDAIIQPGSSGSPILNSKHEAIGVIYAGNKPSGESTRGFAVYFSPEIKKFIADNLDK
  NCTC8325        VSSDAIIQPGSSGSPILNSKHEAIGVIYAGNKPSGESTRGFAVYFSPEIKKFIADNLDK
  Newman          VSSDAIIQPGSSGSPILNSKHEAIGVIYAGNKPSGESTRGFAVYFSPEIKKFIADNLDK
  USA300_FPR3757  VSSDAIIQPGSSGSPILNSKHEAIGVIYAGNKPSGESTRGFAVYFSPEIKKFIADNLDK
                  ***********************************************************