PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN004564000
• symbol^?: splC
• synonym:
• description^?: serine protease SplC

  descriptions from strain specific annotations:

  • serine protease SplC
  • serine protease
  • peptidase S1 and S6, chymotrypsin/Hap
  • peptidase S1 and S6 chymotrypsin/Hap
  • S1B family serine protease SplC
  • serine proteinase
• strand^?: -
• coordinates^?: 4796516..4801433
• synteny block^?: BlockID0035530
• occurrence^?: in 76% of 33 strains

⊟Orthologs

COL:
SACOL1867 (splC)
N315:
SA1629 (splC)
NCTC8325:
SAOUHSC_01939
Newman:
NWMN_1704 (splC)
USA300_FPR3757:
SAUSA300_1756 (splC)
04-02981:
SA2981_1766 (splC)
08BA02176:
—
11819-97:
MS7_1812 (splC)
6850:
RSAU_001668 (splC)
71193:
—
ECT-R 2:
ECTR2_1643
ED133:
SAOV_1796 (splC)
ED98:
SAAV_1819 (splC)
HO 5096 0412:
—
JH1:
SaurJH1_1897
JH9:
SaurJH9_1862
JKD6008:
—
JKD6159:
—
LGA251:
SARLGA251_16950 (splC)
M013:
—
MRSA252:
SAR1906 (splC)
MSHR1132:
—
MSSA476:
SAS1734
Mu3:
SAHV_1796 (splC)
Mu50:
SAV1811 (splC)
MW2:
MW1753 (splC)
RF122:
SAB1671c (splC)
ST398:
—
T0131:
SAT0131_01930
TCH60:
HMPREF0772_11330 (splC)
TW20:
SATW20_18090 (splC)
USA300_TCH1516:
USA300HOU_1804 (splC)
VC40:
SAVC_08295

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MNKNIVIKSMAALAILTSVTGINAAVVEETQQIANAEKNVTQVKDTNIFPYNGVVSFKDA
  N315            MNKNIVIKSMAALAILTSVTGINAAVVEETQQIANAEKNVTQVKDTNNFPYNGVVSFKDA
  NCTC8325        MNKNIVIKSMAALAILTSVTGINAAVVEETQQIANAEKNVTQVKDTNIFPYNGVVSFKDA
  Newman          MNKNIVIKSMAALAILTSVTGINAAVVEETQQIANAEKNVTQVKDTNIFPYNGVVSFKDA
  USA300_FPR3757  MNKNIVIKSMAALAILTSVTGINAAVVEETQQIANAEKNVTQVKDTNIFPYNGVVSFKDA
                  *********************************************** ************
  
  COL             TGFVIGKNTIITNKHVSKDYKVGDRITAHPNGDKGNGGIYKIKSISDYPGDEDISVMNIE
  N315            TGFVIGKNTIITNKHVSKDYKVGDRITAHPNGDKGNGGIYKIKSISDYPGDEDISVMNIE
  NCTC8325        TGFVIGKNTIITNKHVSKDYKVGDRITAHPNGDKGNGGIYKIKSISDYPGDEDISVMNIE
  Newman          TGFVIGKNTIITNKHVSKDYKVGDRITAHPNGDKGNGGIYKIKSISDYPGDEDISVMNIE
  USA300_FPR3757  TGFVIGKNTIITNKHVSKDYKVGDRITAHPNGDKGNGGIYKIKSISDYPGDEDISVMNIE
                  ************************************************************
  
  COL             EQAVERGPKGFNFNENVQAFNFAKDAKVDDKIKVIGYPLPAQNSFKQFESTGTIKRIKDN
  N315            EQAVERGPKGFNFNENVQAFNFAKDAKVDDKIKVIGYPLPAQNSFKQFESTGTIKRIKDN
  NCTC8325        EQAVERGPKGFNFNENVQAFNFAKDAKVDDKIKVIGYPLPAQNSFKQFESTGTIKRIKDN
  Newman          EQAVERGPKGFNFNENVQAFNFAKDAKVDDKIKVIGYPLPAQNSFKQFESTGTIKRIKDN
  USA300_FPR3757  EQAVERGPKGFNFNENVQAFNFAKDAKVDDKIKVIGYPLPAQNSFKQFESTGTIKRIKDN
                  ************************************************************
  
  COL             ILNFDAYIEPGNSGSPVLNSNNEVIGVVYGGIGKIGSEYNGAVYFTPQIKDFIQKHIEQ
  N315            ILNFDAYIEPGNSGSPVLNSNNEVIGVVYGGIGKIGSEYNGAVYFTPQIKDFIQKHIEQ
  NCTC8325        ILNFDAYIEPGNSGSPVLNSNNEVIGVVYGGIGKIGSEYNGAVYFTPQIKDFIQKHIEQ
  Newman          ILNFDAYIEPGNSGSPVLNSNNEVIGVVYGGIGKIGSEYNGAVYFTPQIKDFIQKHIEQ
  USA300_FPR3757  ILNFDAYIEPGNSGSPVLNSNNEVIGVVYGGIGKIGSEYNGAVYFTPQIKDFIQKHIEQ
                  ***********************************************************