PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN004576000
• symbol^?: epiD
• synonym:
• description^?: enterotoxin

  descriptions from strain specific annotations:

  • enterotoxin
  • epidermin biosynthesis protein EpiD
  • flavoprotein EpiD
  • lantibiotic epidermin biosynthesis protein EpiD
  • lantibiotic modifying enzyme
  • epidermin decarboxylase
  • flavoprotein, epiD
  • lantibiotic decarboxylase
• strand^?: -
• coordinates^?: 4808609..4809127
• synteny block^?: BlockID0035600
• occurrence^?: in 42% of 33 strains

⊟Orthologs

COL:
SACOL1875 (epiD)
N315:
—
NCTC8325:
SAOUHSC_01950
Newman:
NWMN_1713 (bsaD)
USA300_FPR3757:
SAUSA300_1764 (epiD)
04-02981:
—
08BA02176:
—
11819-97:
MS7_1820 (epiD)
6850:
—
71193:
—
ECT-R 2:
—
ED133:
SAOV_1804
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
—
JKD6159:
—
LGA251:
SARLGA251_17030
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS1743
Mu3:
—
Mu50:
—
MW2:
MW1762 (bsaD)
RF122:
SAB1680c
ST398:
—
T0131:
SAT0131_01941 (pabB)
TCH60:
—
TW20:
SATW20_18170
USA300_TCH1516:
USA300HOU_1812 (epiD)
VC40:
SAVC_08335

⊟Genome Viewer

COL
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             -----MGENVLICLCGSVNSINISHYIIELKSKFDEVNVIASTNGRKFINGEILKQFCDN
  NCTC8325        -----MGENVLICLCGSVNSINISHYIIELKSKFDEVNVIASTNGRKFINGEILKQFCDN
  Newman          MEAYIMGENVLICLCGSVNSINISHYIIELKSKFDEVNVIASTNGRKFINGEILKQFCDN
  USA300_FPR3757  -----MGENVLICLCGSVNSINISHYIIELKSKFDEVNVIASTNGRKFINGEILKQFCDN
                       *******************************************************
  
  COL             YYDEFEDPFLNHVDIANKHDKIIILPATSNTINKIANGICDNLLLTICHTAFEKLSIFPN
  NCTC8325        YYDEFEDPFLNHVDIANKHDKIIILPATSNTINKIANGICDNLLLTICHTAFEKLSIFPN
  Newman          YYDEFEDPFLNHVDIANKHDKIIILPATSNTINKIANGICDNLLLTICHTAFEKLSIFPN
  USA300_FPR3757  YYDEFEDPFLNHVDIANKHDKIIILPATSNTINKIANGICDNLLLTICHTAFEKLSIFPN
                  ************************************************************
  
  COL             MNLRMWENPVTQNNIRLLKDYGVSIYPANISESYELASKTFKKNVVAPEPYKVLEFI
  NCTC8325        MNLRMWENPVTQNNIRLLKDYGVSIYPANISESYELASKTFKKNVVAPEPYKVLEFI
  Newman          MNLRMWENPVTQNNIRLLKDYGVSIYPANISESYELASKTFKKNVVAPEPYKVLEFI
  USA300_FPR3757  MNLRMWENPVTQNNIRLLKDYGVSIYPANISESYELASKTFKKNVVAPEPYKVLEFI
                  *********************************************************