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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004774000
- symbol?: —
- synonym:
- description?: DNA repair exonuclease
- DNA repair exonuclease
- DNA repair exonuclease, putative
- exonuclease SbcCD subunit D
- metallophosphoesterase
- calcineurin-like phosphoesterase
- calcineurin-like phosphoesterase family protein
- DNA repair exonuclease family protein
- DNA repair exonuclease family protein YhaO
- phosphoesterase
- putative DNA repair exonuclease
- Ser/Thr protein phosphatase family protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4984483..4985679
- synteny block?: BlockID0037060
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1800 (yhaO)
08BA02176:
C248_1886
11819-97:
MS7_1849
6850:
RSAU_001703
71193:
ST398NM01_1910
ECT-R 2:
ECTR2_1686
ED133:
SAOV_1840
ED98:
SAAV_1863
HO 5096 0412:
SAEMRSA15_17490
JH1:
SaurJH1_1931
JH9:
SaurJH9_1897
JKD6008:
SAA6008_01801
JKD6159:
SAA6159_01772
LGA251:
SARLGA251_17270
M013:
M013TW_1850
MRSA252:
SAR1935
MSHR1132:
SAMSHR1132_16900
MSSA476:
SAS1765
Mu3:
SAHV_1829
Mu50:
SAV1844
MW2:
MW1785
RF122:
SAB1777c
ST398:
SAPIG1910
T0131:
SAT0131_01964 (nrdI)
TCH60:
HMPREF0772_11300
TW20:
SATW20_18380
USA300_TCH1516:
USA300HOU_1836 (sbcD)
VC40:
SAVC_08460
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MVKFIHCSDLHLDSPFKSKSHISPKIFEDVQKSAYESFKNIVDIALQQDVDFVIIAGDLF
N315 MVKFIHCSDLHLDSPFKSKSHISPKIFEDVQKSAYESFKNIVDIALQQDVDFVIIAGDLF
NCTC8325 MVKFIHCSDLHLDSPFKSKSHISPKIFEDVQKSAYESFKNIVDIALQQDVDFVIIAGDLF
Newman MVKFIHCSDLHLDSPFKSKSHISPKIFEDVQKSAYESFKNIVDIALQQDVDFVIIAGDLF
USA300_FPR3757 MVKFIHCSDLHLDSPFKSKSHISPKIFEDVQKSAYESFKNIVDIALQQDVDFVIIAGDLF
************************************************************
COL DSENRTLRAEIFLKQQFERLQNEQIFVYVCHGNHDPLSSKISSNWPDNVSVFSNKVETYE
N315 DSENRTLRAEIFLKQQFERLQNEQIFVYVCHGNHDPLSSKISSNWPDNVSVFSNKVETYE
NCTC8325 DSENRTLRAEIFLKQQFERLQNEQIFVYVCHGNHDPLSSKISSNWPDNVSVFSNKVETYE
Newman DSENRTLRAEIFLKQQFERLQNEQIFVYVCHGNHDPLSSKISSNWPDNVSVFSNKVETYE
USA300_FPR3757 DSENRTLRAEIFLKQQFERLQNEQIFVYVCHGNHDPLSSKISSNWPDNVSVFSNKVETYE
************************************************************
COL AITKSGETIYIHGFSYENRASYENKIDEYPSSQGQKGIHIGVLHGTYSKSSVNERYTEFI
N315 AITKSGETIYIHGFSYENRASYENKIDEYPSSQGQKGIHIGVLHGTYSKSSVNERYTEFI
NCTC8325 AITKSGETIYIHGFSYENRASYENKIDEYPSSQGQKGIHIGVLHGTYSKSSVNERYTEFI
Newman AITKSGETIYIHGFSYENRASYENKIDEYPSSQGQKGIHIGVLHGTYSKSSVNERYTEFI
USA300_FPR3757 AITKSGETIYIHGFSYENRASYENKIDEYPSSQGQKGIHIGVLHGTYSKSSVNERYTEFI
************************************************************
COL LEDLNSKLYHYWALGHIHERQQLSDMPVINYSGNIQGRHFNEQGEKGCLLIEGDHLKLKT
N315 LEDLNSKLYHYWALGHIHERQQLSDMPVINYSGNIQGRHFNEQGEKGCLLIEGDHLKLKT
NCTC8325 LEDLNSKLYHYWALGHIHERQQLSDMPVINYSGNIQGRHFNEQGEKGCLLIEGDHLKLKT
Newman LEDLNSKLYHYWALGHIHERQQLSDMPVINYSGNIQGRHFNEQGEKGCLLIEGDHLKLKT
USA300_FPR3757 LEDLNSKLYHYWALGHIHERQQLSDMPVINYSGNIQGRHFNEQGEKGCLLIEGDHLKLKT
************************************************************
COL KFYPTQYIRFEEATIETDKTSKQGLYEVIQNFKEQVREEGKAFYRLTLVINSETLISPQD
N315 KFYPTQYIRFEEATIETDKTSKQGLYEVIQNFKEQVREEGKAFYRLTLVINSETLISPQD
NCTC8325 KFYPTQYIRFEEATIETDKTSKQGLYEVIQNFKEQVREEGKAFYRLTLVINSETLISPQD
Newman KFYPTQYIRFEEATIETDKTSKQGLYEVIQNFKEQVREEGKAFYRLTLVINSETLISPQD
USA300_FPR3757 KFYPTQYIRFEEATIETDKTSKQGLYEVIQNFKEQVREEGKAFYRLTLVINSETLISPQD
************************************************************
COL LLQVEEMITDYEENENQFVYIDELKIQYAQNDESPLVNEFSAELLVDQTVFDKAMSDLYL
N315 LLQVEEMITDYEENENQFVYIDELKIQYAQNDESPLVNEFSAELLVDQTVFDKAMSDLYL
NCTC8325 LLQVEEMITDYEENENQFVYIDELKIQYAQNDESPLVNEFSAELLVDQTVFDKAMSDLYL
Newman LLQVEEMITDYEENENQFVYIDELKIQYAQNDESPLVNEFSAELLVDQTVFDKAMSDLYL
USA300_FPR3757 LLQVEEMITDYEENENQFVYIDELKIQYAQNDESPLVNEFSAELLVDQTVFDKAMSDLYL
************************************************************
COL NPRASKFLDDYGTFDHTALVNRAEEILKAEMRGEQNDN
N315 NPRASKFLDDYGTFDHTALVNRAEEILKAEMRGEQNDN
NCTC8325 NPRASKFLDDYGTFDHTALVNRAEEILKAEMRGEQNDN
Newman NPRASKFLDDYGTFDHTALVNRAEEILKAEMRGEQNDN
USA300_FPR3757 NPRASKFLDDYGTFDHTALVNRAEEILKAEMRGEQNDN
**************************************