Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN005292000
- symbol?: vga
- synonym:
- description?: ABC transporter ATP-binding protein
- ABC transporter ATP-binding protein
- ABC-F family ATP-binding cassette domain-containing protein
- ABC transporter, ATP-binding protein with duplicated ATPase domains
- ABC superfamily ATP binding cassette transporter, ABC protein
- ABC transporter ATP-binding protein uup
- ABC transporter family protein
- ATP-binding ABC transporter protein
- heme ABC transporter ATP-binding protein CcmA
- putative ABC transporter ATP-binding protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 5455544..5457520
- synteny block?: BlockID0040920
- occurrence?: in 97% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1988 (vga)
08BA02176:
C248_2051
11819-97:
MS7_2058
6850:
RSAU_001880
71193:
ST398NM01_2085
ECT-R 2:
ECTR2_1898
ED133:
SAOV_2084
ED98:
SAAV_2095
HO 5096 0412:
SAEMRSA15_19550
JH1:
SaurJH1_2121
JH9:
SaurJH9_2084
JKD6008:
SAA6008_02085
JKD6159:
SAA6159_01960
LGA251:
SARLGA251_18490
M013:
M013TW_1999
MRSA252:
SAR2134
MSHR1132:
SAMSHR1132_18690
MSSA476:
SAS1952
Mu3:
SAHV_2032 (vga)
Mu50:
SAV2047 (vga)
MW2:
MW1971 (vga)
RF122:
SAB1931
ST398:
SAPIG2085
T0131:
SAT0131_02198 (ssaA)
TCH60:
HMPREF0772_11152
TW20:
SATW20_21870
USA300_TCH1516:
—
VC40:
SAVC_09115
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MILLQLNHISKSFDGEDIFTDVDFEVKTGERIGIVGRNGAGKSTLMKIIAGVENYDSGNV
N315 MILLQLNHISKSFDGEDIFTDVDFEVKTGERIGIVGRNGAGKSTLMKIIAGVENYDSGNV
NCTC8325 MILLQLNHISKSFDGEDIFTDVDFEVKTGERIGIVGRNGAGKSTLMKIIAGVENYDSGNV
Newman MILLQLNHISKSFDGEDIFTDVDFEVKTGERIGIVGRNGAGKSTLMKIIAGVENYDSGNV
USA300_FPR3757 MILLQLNHISKSFDGEDIFTDVDFEVKTGERIGIVGRNGAGKSTLMKIIAGVENYDSGNV
************************************************************
COL SKIKNLKLGYLTQQMTLNSNATVFEEMSKPFEHIKRMESLIKEETDWLSKHANDYDSDTY
N315 SKIKNLKLGYLTQQMTLNSNATVFEEMSKPFEHIKRMESLIKEETDWLSKHANDYDSDTY
NCTC8325 SKIKNLKLGYLTQQMTLNSNATVFEEMSKPFEHIKRMESLIKEETDWLSKHANDYDSDTY
Newman SKIKNLKLGYLTQQMTLNSNATVFEEMSKPFEHIKRMESLIKEETDWLSKHANDYDSDTY
USA300_FPR3757 SKIKNLKLGYLTQQMTLNSNATVFEEMSKPFEHIKRMESLIKEETDCLSKHANDYDSDTY
********************************************** *************
COL KTHMSRYESLSNQFEQLEGYQYESKIKTVLYGLNFSEEDFNKPINDFSGGQKTRLSLAQM
N315 KTHMSRYESLSNQFEQLEGYQYESKIKTVLHGLNFSEEDFNKPINDFSGGQKTRLSLAQM
NCTC8325 KTHMSRYESLSNQFEQLEGYQYESKIKTVLYGLNFSEEDFNKPINDFSGGQKTRLSLAQM
Newman KTHMSRYESLSNQFEQLEGYQYESKIKTVLYGLNFSEEDFNKPINDFSGGQKTRLSLAQM
USA300_FPR3757 KTHMSRYESLSNQFEQLEGYQYESKIKTVLYGLNFSEEDFNKPINDFSGGQKTRLSLAQM
******************************:*****************************
COL LLNEPDLLLLDEPTNHLDLETTKWLEDYLRYFKGAIVIISHDRYFLDKIVTQIYDVALGD
N315 LLNEPDLLLLDEPTNHLDLETTKWLEDYLRYFKGAIVIISHDRYFLDKIVTQIYDVALGD
NCTC8325 LLNEPDLLLLDEPTNHLDLETTKWLEDYLRYFKGAIVIISHDRYFLDKIVTQIYDVALGD
Newman LLNEPDLLLLDEPTNHLDLETTKWLEDYLRYFKGAIVIISHDRYFLDKIVTQIYDVALGD
USA300_FPR3757 LLNEPDLLLLDEPTNHLDLETTKWLEDYLRYFKGAIVIISHDRYFLDKIVTQIYDVALGD
************************************************************
COL VKRYVGNYEEFIQQRDLYYQKRMQEYESQQAEIKRLETFVEKNITRASTSGMAKSRRKIL
N315 VKRYVGNYEEFIQQRDLYYQKRMQEYESQQAEIKRLETFVEKNITRASTSGMAKSRRKIL
NCTC8325 VKRYVGNYEEFIQQRDLYYQKRMQEYESQQAEIKRLETFVEKNITRASTSGMAKSRRKIL
Newman VKRYVGNYEEFIQQRDLYYQKRMQEYESQQAEIKRLETFVEKNITRASTSGMAKSRRKIL
USA300_FPR3757 VKRYVGNYEEFIQQRDLYYQKRMQEYESQQAEIKRLETFVEKNITRASTSGMAKSRRKIL
************************************************************
COL EKMERIDKPMLDAKSANIQFGFDRNTGNDVMHVKNLEIGYQTAITKPMSIEVSKGDHIAI
N315 EKMERIDKPMLDAKSANIQFGFDRNTGNDVMHVKNLEIGYQTAITKPISIEVSKGDHIAI
NCTC8325 EKMERIDKPMLDAKSANIQFGFDRNTGNDVMHVKNLEIGYQTAITKPMSIEVSKGDHIAI
Newman EKMERIDKPMLDAKSANIQFGFDRNTGNDVMHVKNLEIGYQTAITKPMSIEVSKGDHIAI
USA300_FPR3757 EKMERIDKPMLDAKSANIQFGFDRNTGNDVMHVKNLEIGYQTAITKPMSIEVSKGDHIAI
***********************************************:************
COL IGPNGIGKSTLIKTIANQQKALNGDITFGANLQIGYYDQKQAEFKSSKTILDYVWDQYPL
N315 IGPNGIGKSTLIKTIANQQKALNGDITFGANLQIGYYDQKQAEFKSSKTILDYVWDQYPL
NCTC8325 IGPNGIGKSTLIKTIANQQKALNGDITFGANLQIGYYDQKQAEFKSSKTILDYVWDQYPL
Newman IGPNGIGKSTLIKTIANQQKALNGDITFGANLQIGYYDQKQAEFKSSKTILDYVWDQYPL
USA300_FPR3757 IGPNGIGKSTLIKTIANQQKALNGDITFGANLQIGYYDQKQAEFKSSKTILDYVWDQYPL
************************************************************
COL MNEKDIRAVLGRFLFVQDDVKKIINDLSGGEKARLLLALLMLQRDNVLILDEPTNHLDID
N315 MNEKDIRAVLGRFLFVQDDVKKIINDLSGGEKARLQLALLMLQRDNVLILDEPTNHLDID
NCTC8325 MNEKDIRAVLGRFLFVQDDVKKIINDLSGGEKARLQLALLMLQRDNVLILDEPTNHLDID
Newman MNEKDIRAVLGRFLFVQDDVKKIINDLSGGEKARLLLALLMLQRDNVLILDEPTNHLDID
USA300_FPR3757 MNEKDIRAVLGRFLFVQDDVKKIINDLSGGEKARLLLALLMLQRDNVLILDEPTNHLDID
*********************************** ************************
COL SKEMLEQALQHFEGTILFVSHDRYFINQLANKVFDLTIDGGKMYLGDYQYYIEKVEEAEA
N315 SKEMLEQALQHFEGTILFVSHDRYFINQLANKVFDLTIDGGKMYLGDYQYYIEKVEEAEA
NCTC8325 SKEMLEQALQHFEGTILFVSHDRYFINQLANKVFDLTIDGGKMYLGDYQYYIEKVEEAEA
Newman SKEMLEQALQHFEGTILFVSHDRYFINQLANKVFDLTIDGGKMYLGDYQYYIEKVEEAEA
USA300_FPR3757 SKEMLEQALQHFEGTILFVSHDRYFINQLANKVFDLTIDGGKMYLGDYQYYIEKVEEAEA
************************************************************
COL LKAHQEEQSVNVQAHKKSMEQSSYHNQKEQRREQRKLERQISECENEIETLETTILQIDE
N315 LKAHQEEQSVNVQAHKKSMEQSSYHNQKEQRREQRKLERQISECENEIETLETTILQIDE
NCTC8325 LKAHQEEQSVNVQAHKKSMEQSSYHNQKEQRREQRKLERQISECENEIETLETTILQIDE
Newman LKAHQEEQSVNVQAHKKSMEQSSYHNQKEQRREQRKLERQISECENEIETLETTILQIDE
USA300_FPR3757 LKAHQEEQSVNVQAHKKSMEQSSYHNQKEQRREQRKLERQISECENEIETLETTILQIDE
************************************************************
COL QLTQPEVYNNPQKANELAIQKQDSEQKLEHAMSKWEELQQKL
N315 QLTQPEVYNNPQKANELAIQKQDSEQKLEHAMSKWEELQQKL
NCTC8325 QLTQPEVYNNPQKANELAIQKQDSEQKLEHAMSKWEELQQKL
Newman QLTQPEVYNNPQKANELAIQKQDSEQKLEHAMSKWEELQQKL
USA300_FPR3757 QLTQPEVYNNPQKANELAIQKQDSEQKLEHAMSKWEELQQKL
******************************************