PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005383000
• symbol^?: ssbB
• synonym:
• description^?: single-stranded DNA-binding protein

  descriptions from strain specific annotations:

  • single-stranded DNA-binding protein
  • bacteriophage L54a single-stranded DNA binding protein
  • single-stranded DNA-binding protein, putative
  • single-stranded DNA- binding protein family
  • ssDNA-binding protein
  • bacteriophage L54a, single-stranded DNA binding protein
  • putative single strand DNA-binding protein
  • single-strand binding protein
  • single-strand binding protein family
  • single strand DNA binding protein
  • single-stranded DNA-binding family protein
• strand^?: -
• coordinates^?: 5548991..5549386
• synteny block^?: BlockID0041800
• occurrence^?: in 97% of 33 strains

⊟Orthologs

COL:
SACOL2089
N315:
SA1899
NCTC8325:
SAOUHSC_02334
Newman:
NWMN_2001
USA300_FPR3757:
SAUSA300_2052
04-02981:
SA2981_2037
08BA02176:
C248_2111
11819-97:
MS7_2113
6850:
RSAU_001935
71193:
ST398NM01_2139
ECT-R 2:
ECTR2_1953 (ssb)
ED133:
SAOV_2138c
ED98:
SAAV_2152
HO 5096 0412:
SAEMRSA15_20050
JH1:
SaurJH1_2171
JH9:
SaurJH9_2133
JKD6008:
SAA6008_02135
JKD6159:
SAA6159_02010
LGA251:
SARLGA251_18980
M013:
M013TW_2054
MRSA252:
SAR2185
MSHR1132:
SAMSHR1132_19200
MSSA476:
SAS2000
Mu3:
SAHV_2081
Mu50:
SAV2096
MW2:
MW2021
RF122:
SAB1981c
ST398:
SAPIG2139
T0131:
SAT0131_02257
TCH60:
HMPREF0772_11095
TW20:
SATW20_22350
USA300_TCH1516:
—
VC40:
SAVC_09360

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNI
  N315            MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNI
  NCTC8325        MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNI
  Newman          MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNI
  USA300_FPR3757  MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNI
                  ************************************************************
  
  COL             EKYTNQGTLVGITGQMRSRKYDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDS
  N315            EKYTNQGTLVGITGQMRSRKYDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDS
  NCTC8325        EKYTNQGTLVGITGQMRSRKYDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDS
  Newman          EKYTNQGTLVGITGQMRSRKYDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDS
  USA300_FPR3757  EKYTNQGTLVGITGQMRSRKYDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSI-----
                  *******************************************************     
  
  COL             QNIDNHDLLEI
  N315            QNIDNHDLLEI
  NCTC8325        QNIDNHDLLEI
  Newman          QNIDNHDLLEI
  USA300_FPR3757  -----------