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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005581000
- symbol?: opuD2
- synonym:
- description?: glycine/betaine ABC transporter permease
- glycine/betaine ABC transporter permease
- BCCT family osmoprotectant transporter
- BCCT family transporter
- glycine betaine transporter
- glycine betaine transporter, putative
- osmoprotectant transporter
- Glycine betaine transporter OpuD
- BCCT family betaine/carnitine/choline transporter
- choline/carnitine/betaine transporter
- choline transport protein BetT
- glycine betaine transporter 2
- glycine betaine transporter opuD-like protein
- transporter, betaine/carnitine/choline transporter family protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5719794..5721356
- synteny block?: BlockID0043410
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2123 (opuD)
08BA02176:
C248_2223 (opuD2)
11819-97:
MS7_2208
6850:
RSAU_002029 (opuD2)
71193:
ST398NM01_2245
ECT-R 2:
ECTR2_2046
ED133:
SAOV_2232c
ED98:
SAAV_2246 (opuD2)
HO 5096 0412:
SAEMRSA15_20900 (opuD2)
JH1:
SaurJH1_2255
JH9:
SaurJH9_2216
JKD6008:
SAA6008_02226 (betT)
JKD6159:
SAA6159_02096 (betT)
LGA251:
SARLGA251_19800 (opuD2)
M013:
M013TW_2151
MRSA252:
SAR2276 (opuD2)
MSHR1132:
SAMSHR1132_20170
MSSA476:
SAS2086
Mu3:
SAHV_2169
Mu50:
SAV2185
MW2:
MW2111
RF122:
SAB2066c (opuD)
ST398:
SAPIG2245
T0131:
SAT0131_02358 (sspA)
TCH60:
HMPREF0772_11006 (opuD)
TW20:
SATW20_23230 (opuD2)
USA300_TCH1516:
USA300HOU_2178
VC40:
SAVC_09815
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKNKSVSLVFWVSLVICTIFVAFGAIFPKQLEKLTQNITTFIALHFSWYYLLLVLVILFV
N315 MKNKSVSLVFWVSLVICTIFVAFGAIFPKQLEKLTQNITTFIALHFSWYYLLLVLVILFV
NCTC8325 MKNKSVSLVFWVSLVICTIFVAFGAIFPKQLEKLTQNITTFIALHFSWYYLLLVLVILFV
Newman MKNKSVSLVFWVSLVICTIFVAFGAIFPKQLEKLTQNITTFIALHFSWYYLLLVLVILFV
USA300_FPR3757 MKNKSVSLVFWVSLVICTIFVAFGAIFPKQLEKLTQNITTFIALHFSWYYLLLVLVILFV
************************************************************
COL CVYILFSRYANITLGEEGEDPEFSLPSWFAMLFSAGMGIGLVFWTTAEPISHAFKLTPIH
N315 CVYILFSRYANITLGEEGEDPEFSLPSWFAMLFSAGMGIGLVFWTTAEPISHAFKLTPIH
NCTC8325 CVYILFSRYANITLGEEGEDPEFSLPSWFAMLFSAGMGIGLVFWTTAEPISHAFKLTPIH
Newman CVYILFSRYANITLGEEGEDPEFSLPSWFAMLFSAGMGIGLVFWTTAEPISHAFKLTPIH
USA300_FPR3757 CVYILFSRYANITLGEEGEDPEFSLPSWFAMLFSAGMGIGLVFWTTAEPISHAFKLTPIH
************************************************************
COL KAGTQSAINDAMQFSFFHWGIHAWAVYGIVALVFAYFSFHKGYPGLVSATLTPLLGEKAM
N315 KAGTQSAINDAMQFSFFHWGIHAWAVYGIVALVFAYFSFHKGYPGLVSATLTPLLGEKAM
NCTC8325 KAGTQSAINDAMQFSFFHWGIHAWAVYGIVALVFAYFSFHKGYPGLVSATLTPLLGEKAM
Newman KAGTQSAINDAMQFSFFHWGIHAWAVYGIVALVFAYFSFHKGYPGLVSATLTPLLGEKAM
USA300_FPR3757 KAGTQSAINDAMQFSFFHWGIHAWAVYGIVALVFAYFSFHKGYPGLVSATLTPLLGEKAM
************************************************************
COL RGPLGGAIDVLAVIATVTGVAATLGFGALQINEGLHFLFNVPSNFTMQVILIVIATILFT
N315 RGPLGGAIDVLAVIATVTGVAATLGFGALQINEGLHFLFNVPSNFTMQVILIVIATILFT
NCTC8325 RGPLGGAIDVLAVIATVTGVAATLGFGALQINEGLHFLFNVPSNFTMQVILIVIATILFT
Newman RGPLGGAIDVLAVIATVTGVAATLGFGALQINEGLHFLFNVPSNFTMQVILIVIATILFT
USA300_FPR3757 RGPLGGAIDVLAVIATVTGVAATLGFGALQINEGLHFLFNVPSNFTMQVILIVIATILFT
************************************************************
COL WSAWSGIDKGIKTLSNINMLLAFVVLIGLFIVGPTLYILNTFTNGLGNYIANFFSMSLRI
N315 WSAWSGIDKGIKTLSNINMLLAFVVLIGLFIVGPTLYILNTFTNGLGNYIANFFSMSLRI
NCTC8325 WSAWSGIDKGIKTLSNINMLLAFVVLIGLFIVGPTLYILNTFTNGLGNYIANFFSMSLRI
Newman WSAWSGIDKGIKTLSNINMLLAFVVLIGLFIVGPTLYILNTFTNGLGNYIANFFSMSLRI
USA300_FPR3757 WSAWSGIDKGIKTLSNINMLLAFVVLIGLFIVGPTLYILNTFTNGLGNYIANFFSMSLRI
************************************************************
COL PTGGQKFQWLQNWTIFYWAWWISWAPFVGIFIARVSKGRTIKEFILGVLFVPALVCFIFF
N315 PSGGQKFQWLQNWTIFYWAWWISWAPFVGIFIARVSKGRTIKEFILGVLFVPALVCFIFF
NCTC8325 PTGGQKFQWLQNWTIFYWAWWISWAPFVGIFIARVSKGRTIKEFILGVLFVPALVCFIFF
Newman PTGGQKFQWLQNWTIFYWAWWISWAPFVGIFIARVSKGRTIKEFILGVLFVPALVCFIFF
USA300_FPR3757 PTGGQKFQWLQNWTIFYWAWWISWAPFVGIFIARVSKGRTIKEFILGVLFVPALVCFIFF
*:**********************************************************
COL AVFGASAIYLQDNHIADIAKAATETATFATLQHYPLGFVLSLITLLVIMIFFVTSADSAT
N315 AVFGASAIYLQDNHIADIAKAATETATFATLQHYPLGFVLSLITLLVIMIFFVTSADSAT
NCTC8325 AVFGASAIYLQDNHIADIAKAATETATFATLQHYPLGFVLSLITLLVIMIFFVTSADSAT
Newman AVFGASAIYLQDNHIADIAKAATETATFATLQHYPLGFVLSLITLLVIMIFFVTSADSAT
USA300_FPR3757 AVFGASAIYLQDNHIADIAKAATETATFATLQHYPLGFVLSLITLLVIMIFFVTSADSAT
************************************************************
COL YVLGMLSSSGDINPKSFVKVSWGIIMALFAIIMIYTGGTQAIQNLLIIAALPFSVVIIAM
N315 YVLGMLSSRGDINPKSFVKVSWGIIMALFAIIMIYTGGTQAIQNLLIIAALPFSVVIIAM
NCTC8325 YVLGMLSSSGDINPKSFVKVSWGIIMALFAIIMIYTGGTQAIQNLLIIAALPFSVVIIAM
Newman YVLGMLSSSGDINPKSFVKVSWGIIMALFAIIMIYTGGTQAIQNLLIIAALPFSVVIIAM
USA300_FPR3757 YVLGMLSSSGDINPKSFVKVSWGIIMALFAIIMIYTGGTQAIQNLLIIAALPFSVVIIAM
******** ***************************************************
COL IWSLIKSLSEEKPRNSNKVLIKHRDPDILEYRSSKHIDEN
N315 IWSLLKSLSEEKPRNSNKVLIKHRDPDILEYRSSKHIDEN
NCTC8325 IWSLIKSLSEEKPRNSNKVLIKHRDPDILEYRSSKHIDEN
Newman IWSLIKSLSEEKPRNSNKVLIKHRDPDILEYRSSKHIDEN
USA300_FPR3757 IWSLIKSLSEEKPRNSNKVLIKHRDPDILEYRSSKHIDEN
****:***********************************