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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005594000
- symbol?: lacR
- synonym:
- description?: DeoR/GlpR transcriptional regulator
- DeoR/GlpR transcriptional regulator
- lactose phosphotransferase system repressor
- lactose phosphotransferase system repressor, putative
- deoR-family regulatory protein
- DeoR family transcriptional regulator
- lactose PTS family porter repressor
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5732552..5733307
- synteny block?: BlockID0043540
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2134 (lacR)
08BA02176:
C248_2235 (lacR)
11819-97:
MS7_2219 (lacR)
6850:
RSAU_002040 (lacR)
71193:
ST398NM01_2256
ECT-R 2:
ECTR2_2057
ED133:
SAOV_2243c
ED98:
SAAV_2257
HO 5096 0412:
SAEMRSA15_21010 (lacR)
JH1:
SaurJH1_2266
JH9:
SaurJH9_2227
JKD6008:
SAA6008_02237 (deoR)
JKD6159:
SAA6159_02107 (deoR)
LGA251:
SARLGA251_19910 (lacR)
M013:
M013TW_2164
MRSA252:
SAR2287 (lacR)
MSHR1132:
SAMSHR1132_20280
MSSA476:
SAS2097
Mu3:
SAHV_2180 (lacR)
Mu50:
SAV2196 (lacR)
MW2:
MW2122 (lacR)
RF122:
SAB2077c (lacR)
ST398:
SAPIG2256
T0131:
SAT0131_02370 (qoxC)
TCH60:
HMPREF0772_10995 (lacR)
TW20:
SATW20_23340 (lacR)
USA300_TCH1516:
USA300HOU_2189 (lacR)
VC40:
SAVC_09870
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL ------------MNKHERLDEIAKLVNKKGTIRTNEIVEGLNVSDMTVRRDLIELENKGI
N315 ------------MNKHERLDEIAKLVNKKGTIRTNEIVEGLNVSDMTVRRDLIELENKGI
NCTC8325 MTHRLNKGGNFTLNKHERLDEIAKLVNKKGTIRTNEIVEGLNVSDMTVRRDLIELENKGI
Newman ------------MNKHERLDEIAKLVNKKGTIRTNEIVEGLNVSDMTVRRDLIELENKGI
USA300_FPR3757 ------------MNKHERLDEIAKLVNKKGTIRTNEIVEGLNVSDMTVRRDLIELENKGI
:***********************************************
COL LTKIHGGARSNSTFQYKEISHKEKHTRQIAEKRFIAKKAASLIEDGDTLFFGPGTTVELL
N315 LTKIHGGARSNSTFQYKEISHKEKHTRQIAEKRYIARKAASLIEDGDTLFFGPGTTVELL
NCTC8325 LTKIHGGARSNSTFQYKEISHKEKHTRQIAEKRFIAKKAASLIEDGDTLFFGPGTTVELL
Newman LTKIHGGARSNSTFQYKEISHKEKHTRQIAEKRFIAKKAASLIEDGDTLFFGPGTTVELL
USA300_FPR3757 LTKIHGGARSNSTFQYKEISHKEKHTRQIAEKRFIAKKAASLIEDGDTLFFGPGTTVELL
*********************************:**:***********************
COL AEEVNHHTLTIITNCLPVYKILLEKQTAHFRVYLIGGEMRHITEAFVGEMANAMLEKLRF
N315 AEEVNHHTLTIITNCLPVYKILLEKQTAHFRVYLIGGEMRHITEAFVGEMANAMLEKLRF
NCTC8325 AEEVNHHTLTIITNCLPVYKILLEKQTAHFRVYLIGGEMRHITEAFVGEMANAMLEKLRF
Newman AEEVNHHTLTIITNCLPVYKILLEKQTAHFRVYLIGGEMRHITEAFVGEMANAMLEKLRF
USA300_FPR3757 AEEVNHHTLTIITNCLPVYKILLEKQTAHFRVYLIGGEMRHITEAFVGEMANAMLEKLRF
************************************************************
COL SKMFFSSNAVNKGAVMTSTLDEAYTQQLALSNSIEKYLLIDHTKVGKEDFTSFCQLNELT
N315 SKMFFSSNAVNKGAVMTSTLDEAYTQQLALSNSIEKYLLIDHTKVGKEDFTSFCQLNELT
NCTC8325 SKMFFSSNAVNKGAVMTSTLDEAYTQQLALSNSIEKYLLIDHTKVGKEDFTSFCQLNELT
Newman SKMFFSSNAVNKGAVMTSTLDEAYTQQLALSNSIEKYLLIDHTKVGKEDFTSFCQLNELT
USA300_FPR3757 SKMFFSSNAVNKGAVMTSTLDEAYTQQLALSNSIEKYLLIDHTKVGKEDFTSFCQLNELT
************************************************************
COL AVVMDYEDEEKVETIKTYIEVVD
N315 AVVMDYEDEEKVETIKTYIEVVD
NCTC8325 AVVMDYEDEEKVETIKTYIEVVD
Newman AVVMDYEDEEKVETIKTYIEVVD
USA300_FPR3757 AVVMDYEDEEKVETIKTYIEVVD
***********************