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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005669000
- symbol?: truA
- synonym:
- description?: tRNA pseudouridine(38-40) synthase TruA
- tRNA pseudouridine(38-40) synthase TruA
- tRNA pseudouridine synthase A
- tRNA pseudouridine synthase, putative
- putative tRNA pseudouridine synthase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5791823..5792626
- synteny block?: BlockID0044160
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2157 (truA)
08BA02176:
C248_2255
11819-97:
MS7_2239 (truA)
6850:
RSAU_002055 (truA)
71193:
ST398NM01_2272
ECT-R 2:
ECTR2_2081 (truA)
ED133:
SAOV_2257c
ED98:
SAAV_2281 (truA)
HO 5096 0412:
SAEMRSA15_21180
JH1:
SaurJH1_2287 (truA)
JH9:
SaurJH9_2246 (truA)
JKD6008:
SAA6008_02256 (truA)
JKD6159:
SAA6159_02126 (truA)
LGA251:
SARLGA251_20050
M013:
M013TW_2179
MRSA252:
SAR2302 (truA)
MSHR1132:
SAMSHR1132_20450
MSSA476:
SAS2110 (truA)
Mu3:
SAHV_2203 (truA)
Mu50:
SAV2219 (truA)
MW2:
MW2138 (truA)
RF122:
SAB2092c (truA)
ST398:
SAPIG2272 (truA)
T0131:
SAT0131_02392
TCH60:
HMPREF0772_10979 (truA)
TW20:
SATW20_23530
USA300_TCH1516:
USA300HOU_2210 (truA)
VC40:
SAVC_09965 (truA)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY
N315 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY
NCTC8325 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY
Newman MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY
USA300_FPR3757 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY
************************************************************
COL FHFDTELNIPMSQWQYAMNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRD
N315 FHFDTELNIPMSQWQYAMNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRD
NCTC8325 FHFDTELNIPMSQWQYAMNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRD
Newman FHFDTELNIPMSQWQYAMNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRD
USA300_FPR3757 FHFDTELNIPMSQWQYAMNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRD
************************************************************
COL PFQSGLKTFIPETLDLGKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTDDG
N315 PFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTDDG
NCTC8325 PFQSGLKTFIPETLDLGKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTDDG
Newman PFQSGLKTFIPETLDLGKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTDDG
USA300_FPR3757 PFQSGLKTFIPETLDLGKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTDDG
****************.*******************************************
COL FDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAPAEGLYLEK
N315 FDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEISDVPKLLESKNRKNVPFTAPAEGLYLEK
NCTC8325 FDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAPAEGLYLEK
Newman FDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAPAEGLYLEK
USA300_FPR3757 FDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAPAEGLYLEK
*******************************:****************************
COL IYLDENELLKDFGNDIKIHRKKSLQND
N315 IYLDENELLKDFGNDIKIHRKKSLQND
NCTC8325 IYLDENELLKDFGNDIKIHRKKSLQND
Newman IYLDENELLKDFGNDIKIHRKKSLQND
USA300_FPR3757 IYLDENELLKDFGNDIKIHRKKSLQND
***************************