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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005788000
- symbol?: —
- synonym:
- description?: transcriptional regulator
- transcriptional regulator
- cell envelope-related transcriptional attenuator
- LytR family cell envelope-related transcriptional attenuator
- putative transcriptional regulator
- membrane-bound protein lytR
- transcriptional regulator, putative
- cell envelope-associated transcriptional attenuator
- Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily F2
- cell envelope transcriptional attenuator
- LytR family transcriptional regulator
- transcriptional regulator lytR
- transcription antiterminator LytR
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5875795..5876649
- synteny block?: BlockID0045330
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2249
08BA02176:
C248_2352
11819-97:
MS7_2327
6850:
RSAU_002147
71193:
ST398NM01_2361
ECT-R 2:
ECTR2_2169
ED133:
SAOV_2350c
ED98:
SAAV_2372
HO 5096 0412:
SAEMRSA15_22080
JH1:
SaurJH1_2377
JH9:
SaurJH9_2334
JKD6008:
SAA6008_02345
JKD6159:
SAA6159_02214
LGA251:
SARLGA251_20930
M013:
M013TW_2267
MRSA252:
SAR2394
MSHR1132:
SAMSHR1132_21350
MSSA476:
SAS2202
Mu3:
SAHV_2294
Mu50:
SAV2310
MW2:
MW2230
RF122:
SAB2187c
ST398:
SAPIG2361
T0131:
SAT0131_02490 (sdhA)
TCH60:
HMPREF0772_10885 (lytR2)
TW20:
SATW20_24410
USA300_TCH1516:
USA300HOU_2292
VC40:
SAVC_10410
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MGLKRSSKSKMSLPKKIFLWVFGILVILAIVAVVYVAAKIFITGNKIHNPLDRNHSELRD
N315 --MKRSSKSKMSLPKKIFLWVFGILVILAIVAVVYVAAKIFITGNKIHNPLDRNHSELRD
NCTC8325 ----------MSLPKKIFLWVFGILVILAIVAVVYVAAKIFITGNKIHNPLDRNHSELRD
Newman --MKRSSKSKMSLPKKIFLWVFGILVILAIVAVVYVAAKIFITGNKIHNPLDRNHSELRD
USA300_FPR3757 ----------MSLPKKIFLWVFGILVILAIVAVVYVAAKIFITGNKIHNPLDRNHSELRD
**************************************************
COL KKVSLNDGDPFTIALFGVDSDADRKKKGGGERSDSIMILSINPKTKKTEIVSIPRDTRAE
N315 KKVSLNDGDPFTIALFGVDSDADRKKKGGGERSDSIMILSINPKTKKTEIVSIPRDTRAE
NCTC8325 KKVSLNDGDPFTIALFGVDSDADRKKKGGGERSDSIMILSINPKTKKTEIVSIPRDTRAE
Newman KKVSLNDGDPFTIALFGVDSDADRKKKGGGERSDSIMILSINPKTKKTEIVSIPRDTRAE
USA300_FPR3757 KKVSLNDGDPFTIALFGVDSDADRKKKGGGERSDSIMILSINPKTKKTEIVSIPRDTRAE
************************************************************
COL IVGRGTTEKIAHAYAYGGPNMAVKSLEKLMNVPIDHYATIDMDGLHNMIDSIGGVDVVSN
N315 IVGRGTTEKIAHAYAYGGPNMAVKSLEKLMNVPIDHYATIDMDGLHNMIDSIGGVDVVSN
NCTC8325 IVGRGTTEKIAHAYAYGGPNMAVKSLEKLMNVPIDHYATIDMDGLHNMIDSIGGVDVVSN
Newman IVGRGTTEKIAHAYAYGGPNMAVKSLEKLMNVPIDHYATIDMDGLHNMIDSIGGVDVVSN
USA300_FPR3757 IVGRGTTEKIAHAYAYGGPNMAVKSLEKLMNVPIDHYATIDMDGLHNMIDSIGGVDVVSN
************************************************************
COL DTFTVDGVRFTKGQQTHVNGDQALKFIRSRKEEGAGGDFGRQQRQQIVLEAMANKIASPS
N315 DTFTVDGVRFTKGQQTHVNGDQALKFIRSRKEEGAGGDFGRQQRQQIVLEAMANKIASPS
NCTC8325 DTFTVDGVRFTKGQQTHVNGDQALKFIRSRKEEGAGGDFGRQQRQQIVLEAMANKIASPS
Newman DTFTVDGVRFTKGQQTHVNGDQALKFIRSRKEEGAGGDFGRQQRQQIVLEAMANKIASPS
USA300_FPR3757 DTFTVDGVRFTKGQQTHVNGDQALKFIRSRKEEGAGGDFGRQQRQQIVLEAMANKIASPS
************************************************************
COL SITHFNSLMNEIQNNVKTDLTLGDLNTIRSNYKDANDTINKHQLSGQGGIQSDGLYYFIP
N315 SITHFNSLMNEIQNNVKTDLTLGDLNTIRSNYKDANDTINKHQLSGQGGIQSDGLYYFIP
NCTC8325 SITHFNSLMNEIQNNVKTDLTLGDLNTIRSNYKDANDTINKHQLSGQGGIQSDGLYYFIP
Newman SITHFNSLMNEIQNNVKTDLTLGDLNTIRSNYKDANDTINKHQLSGQGGIQSDGLYYFIP
USA300_FPR3757 SITHFNSLMNEIQNNVKTDLTLGDLNTIRSNYKDANDTINKHQLSGQGGIQSDGLYYFIP
************************************************************
COL SEQSKAESTKLLKDNLE
N315 SEQSKAESTKLLKDNLE
NCTC8325 SEQSKAESTKLLKDNLE
Newman SEQSKAESTKLLKDNLE
USA300_FPR3757 SEQSKAESTKLLKDNLE
*****************