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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005905000
- symbol?: araC
- description?: transcriptional regulator
- transcriptional regulator
- AraC family transcriptional regulator
- transcriptional regulator, putative
- AraC family transcriptional regulator Rsp
- AraC family regulatory protein
- bacterial regulatory helix-turn-helix s, AraC family protein
- pseudogene
- regulatory helix-turn-helix proteins, AraC family protein
- transcription regulatory protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 5972114..5975565
- synteny block?: BlockID0046490
- occurrence?: in 52% of 33 strains
⊟Orthologs[edit | edit source]
Newman:
—
USA300_FPR3757:
—
04-02981:
SA2981_2318
08BA02176:
—
11819-97:
MS7_2398
6850:
RSAU_002217
71193:
—
ECT-R 2:
ECTR2_2240
ED133:
—
ED98:
SAAV_2445
HO 5096 0412:
—
JH1:
SaurJH1_2452
JH9:
SaurJH9_2405
JKD6008:
SAA6008_02418 (araC)
JKD6159:
—
LGA251:
—
M013:
M013TW_2341
MRSA252:
—
MSHR1132:
SAMSHR1132_22080
MSSA476:
SAS2271
Mu3:
SAHV_2365
Mu50:
SAV2381
MW2:
MW2301
RF122:
—
ST398:
—
T0131:
—
TCH60:
—
TW20:
SATW20_25110
USA300_TCH1516:
—
VC40:
—
⊟Genome Viewer[edit | edit source]
| COL chromosome | |
| N315 chromosome |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MTCQLKIHHTLSTIPSRNINNIMVLFSLTSKLNITINGETKDVSNYIILINHGDIYNINH
N315 MTCQLKIHHTLSTIPSRNINNIMVLFSLTSKLNITINGETKDVSNYIILINHGDIYNINH
************************************************************
COL GENIIELMIPVFYFYQQDDDFFNGYLDRHLLQSSNYIKSLIADLISTPTSSSLMGKNIGQ
N315 GENIIELMIPVFYFYQQDDDFFNGYLDRHLLQSSNYIKSLIADLISTPTSSSLMGKNIGQ
************************************************************
COL SIIDTLLKEAFIRIDHEYLPNIALSNPVFIDCVNYIHDNIDAHLSLKDIAMHCNISESYC
N315 SIIDTLLKEAFIRIDHEYLPNIALSNPVFIDCVNYIHDNIDAHLSLKDIAMHCNISESYC
************************************************************
COL SNLFVRYLSMNFKDYFTSIKLVNAINLLLSTKHSITTVSELAGFNSHTNFANQFKNYLHF
N315 SNLFVRYLSMNFKDYFTSIKLVNAINLLLSTKHSITTVSELAGFNSHTNFANQFKNYLHF
************************************************************
COL SPKQFRSLVSKITEPPQIHFQQDNVSQFTELISTIDLTAQLATNTTDIHIDDFNPKDRSQ
N315 SPKQFRSLVSKITEPPQIHFQQDNVSQFTELISTIDLTAQLATNTTDIHIDDFNPKDRSQ
************************************************************
COL RAKVFVRFSNFNELFQFIFNEYYDINFEHLPKPVVFIDDIHDIEISQTNYNLLNRCFEKL
N315 RAKVFVRFSNFNELFQFIFNEYYDINFEHLPKPVVFIDDIHDIEISQTNYNLLNRCFEKL
************************************************************
COL FEKNIGLAIAIKSTQQFETMKQLILTFLQGNQDYKTSKKLVKFMLVFCSNSMTAEEIHLC
N315 FEKNIGLAIAIKSTQQFETMKQLILTFLQGNQDYKTSKKLVKFMLVFCSNSMTAEEIHLC
************************************************************
COL HLKIKNKNKEIKYSVTVDGFLETYSTVEQVYDVMQRLKFHYYFIDIENSKTATHLITKNQ
N315 HLKIKNKNKEIKYSVTVDGFLETYSTVEQVYDVMQRLKFHYYFIDIENSKTATHLITKNQ
************************************************************
COL HYHQTDTHFEQYKKFILDSGISSTQFVYNNLSVSGFKYTNDGKNPIQLSDIVYHLIALLR
N315 HYHQTDTHFEQYKKFILDSGISSTQFVYNNLSVSGFKYTNDGKNPIQLSDIVYHLIALLR
************************************************************
COL YGGGISYQLLDDHSNYISLYNKYGSPLPLMHLYKMFRPFVNEDIEITNNYVLSRKDNNYH
N315 YGGGISYQLLDDHSNYISLYNKYGSPLPLMHLYKMFRPFVNEDIEITNNYVLSRKDNNYH
************************************************************
COL FLLFNKINDRYMSDVKQDFIFHNELPQDSLMIIKTLNHEHGSIQHLLPISDQLVYIEKEI
N315 FLLFNKINDRYMSDVKQDFIFHNELPQDSLMIIKTLNHEHGSIQHLLPISDQLVYIEKEI
************************************************************
COL LDELDKTNYPKTELAVQEETGRTFELKLNHDEVKYICFKPS
N315 LDELDKTNYPKTELAVQEETGRTFELKLNHDEVKYICFKPS
*****************************************