PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005920000
• symbol^?: —
• synonym:
• description^?: MerR family transcriptional regulator

  descriptions from strain specific annotations:

  • MerR family transcriptional regulator
  • antibiotic resistance transcriptional regulator, putative
  • MerR family regulatory protein
  • HTH-type transcriptional activator tipA
  • merR family regulatory family protein
  • pseudogene
  • TipAS antibiotic-recognition domain-containing protein
  • TipAS antibiotic-recognition domain family
  • transcriptional regulator
  • transcriptional regulator, MerR family
• strand^?: +
• coordinates^?: 5985689..5986408
• synteny block^?: BlockID0046640
• occurrence^?: in 91% of 33 strains

⊟Orthologs

COL:
SACOL2388
N315:
SA2178
NCTC8325:
SAOUHSC_02674
Newman:
NWMN_2290
USA300_FPR3757:
SAUSA300_2336
04-02981:
SA2981_2327
08BA02176:
C248_2437
11819-97:
—
6850:
RSAU_002228
71193:
ST398NM01_2443
ECT-R 2:
ECTR2_2249
ED133:
SAOV_2436
ED98:
SAAV_2455
HO 5096 0412:
SAEMRSA15_22890
JH1:
SaurJH1_2462
JH9:
SaurJH9_2414
JKD6008:
SAA6008_02431
JKD6159:
—
LGA251:
—
M013:
M013TW_2350
MRSA252:
SAR2478
MSHR1132:
SAMSHR1132_22180
MSSA476:
SAS2281
Mu3:
SAHV_2374
Mu50:
SAV2390
MW2:
MW2312
RF122:
SAB2269
ST398:
SAPIG2443
T0131:
SAT0131_02581
TCH60:
HMPREF0772_10797
TW20:
SATW20_25200
USA300_TCH1516:
USA300HOU_2372
VC40:
SAVC_10820

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MAYTYTLKDIIEITGVTKRTLHYYDEIGLLVPDKNDKNYRVYKQQDLEKLQKILILKSFD
  N315            MAYTYTLKDIIEITGVTKRTLHYYDEIGLLVPDKNDKNYRVYKQQDLEKLQKILILKSFD
  NCTC8325        MAYTYTLKDIIEITGVTKRTLHYYDEIGLLVPDKNDKNYRVYKQQDLEKLQKILILKSFD
  Newman          MAYTYTLKDIIEITGVTKRTLHYYDEIGLLVPDKNDKNYRVYKQQDLEKLQKILILKSFD
  USA300_FPR3757  MAYTYTLKDIIEITGVTKRTLHYYDEIGLLVPDKNDKNYRVYKQQDLEKLQKILILKSFD
                  ************************************************************
  
  COL             FDIAKIKQYISYDNEQLRKLLSEQISKLDKKISDLQLIRRSVCEFIKGLSLIDTSILNKT
  N315            FDIAKIKQYISYDNEQLRKLLSEQISKLDKKISDLQLIRRSVCEFIKGLSLIDTSILNKT
  NCTC8325        FDIAKIKQYISYDNEQLRKLLSEQISKLDKKISDLQLIRRSVCEFIKGLSLIDTSILNKT
  Newman          FDIAKIKQYISYDNEQLRKLLSEQISKLDKKISDLQLIRRSVCEFIKGLSLIDTSILNKT
  USA300_FPR3757  FDIAKIKQYISYDNEQLRKLLSEQISKLDKKISDLQLIRRSVCEFIKGLSLIDTSILNKT
                  ************************************************************
  
  COL             LQSQYDKEASIKYGHTKAYQSFIRRKDSLQSQDIRHKLTTIFNKFNHMSLSHYPIQDCSD
  N315            LQSQYDKEASIKYGHTKAYQSFIRRKDSLQSQDIRHKLTTIFNKFNHMSLSHYPIQDCSD
  NCTC8325        LQSQYDKEASIKYGHTKAYQSFIRRKDSLQSQDIRHKLTTIFNKFNHMSLSHYPIQDCSD
  Newman          LQSQYDKEASIKYGHTKAYQSFIRRKDSLQSQDIRHKLTTIFNKFNHMSLSHYPIQDCSD
  USA300_FPR3757  LQSQYDKEASIKYGHTKAYQSFIRRKDSLQSQDIRHKLTTIFNKFNHMSLSHYPIQDCSD
                  ************************************************************
  
  COL             LVFEWKAFMNTIADFDDETLCCIAKTYEDDTRFKDYFNSYDNQNLASYISEAVNYFLSNV
  N315            LVFEWKAFMNTIADFDDETLCCIAKTYEDDTRFKDYFNSYDNQNLASYISEAVNYFLSNV
  NCTC8325        LVFEWKAFMNTIADFDDETLCCIAKTYEDDTRFKDYFNSYDNQNLASYISEAVNYFLSNV
  Newman          LVFEWKAFMNTIADFDDETLCCIAKTYEDDTRFKDYFNSYDNQNLASYISEAVNYFLSNV
  USA300_FPR3757  LVFEWKAFMNTIADFDDETLCCIAKTYEDDTRFKDYFNSYDNQNLASYISEAVNYFLSNV
                  ************************************************************
  
  COL             NKSDNF
  N315            NKSDNF
  NCTC8325        NKSDNF
  Newman          NKSDNF
  USA300_FPR3757  NKSDNF
                  ******