PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005944000
• symbol^?: —
• synonym:
• description^?: cystatin-like fold lipoprotein

  descriptions from strain specific annotations:

  • cystatin-like fold lipoprotein
  • DUF4467 domain-containing protein
  • lipoprotein
  • lipoprotein, putative
  • putative lipoprotein
• strand^?: -
• coordinates^?: 6008279..6008629
• synteny block^?: BlockID0046880
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2408
N315:
SA2198
NCTC8325:
SAOUHSC_02695
Newman:
NWMN_2309
USA300_FPR3757:
SAUSA300_2355
04-02981:
SA2981_2347
08BA02176:
C248_2455
11819-97:
MS7_2425
6850:
RSAU_002248
71193:
ST398NM01_2461
ECT-R 2:
ECTR2_2269
ED133:
SAOV_2456c
ED98:
SAAV_2475
HO 5096 0412:
SAEMRSA15_23090
JH1:
SaurJH1_2483
JH9:
SaurJH9_2435
JKD6008:
SAA6008_02451
JKD6159:
SAA6159_02311
LGA251:
SARLGA251_21920
M013:
M013TW_2371
MRSA252:
SAR2500
MSHR1132:
SAMSHR1132_22380
MSSA476:
SAS2301
Mu3:
SAHV_2394
Mu50:
SAV2410
MW2:
MW2332
RF122:
SAB2290c
ST398:
SAPIG2461
T0131:
SAT0131_02601 (priA)
TCH60:
HMPREF0772_10777
TW20:
SATW20_25400
USA300_TCH1516:
USA300HOU_2391
VC40:
SAVC_10920

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MGALKRFVATVLLLLVFISGCGNDKYVKEIDEAVKIQNQKQEQLAKKGNGDRVDHFERKD
  N315            ---MKRFVATVLLLLVFISGCGNDKYVKEIDEAVKIQNQKQEQLAKKGNGDRVDHFERKD
  NCTC8325        -------MATVLLLLVFISGCGNDKYVKEIDEAVKIQNQKQEQLAKKGNGDRVDHFERKD
  Newman          MGALKRFVATVLLLLVFISGCGNDKYVKEIDEAVKIQNQKQEQLAKKGNGDRVDHFERKD
  USA300_FPR3757  -------MATVLLLLVFISGCGNDKYVKEIDEAVKIQNQKQEQLAKKGNGDRVDHFERKD
                         :****************************************************
  
  COL             ANIYVYDKDKIIILAYKPLSNDDEVHYYAYDFSDKRVSYKQDFDSRRYYQQHDADYHEEN
  N315            ANIYVYDKDKIIILAYKPLSNDDEVHYYAYDFSDKRVSYKQDFDSRRYYQQHDADYHEEN
  NCTC8325        ANIYVYDKDKIIILAYKPLSNDDEVHYYAYDFSDKRVSYKQDFDSRRYYQQHDADYHEEN
  Newman          ANIYVYDKDKIIILAYKPLSNDDEVHYYAYDFSDKRVSYKQDFDSRRYYQQHDADYHEEN
  USA300_FPR3757  ANIYVYDKDKIIILAYKPLSN-DEVHYYAYDFSDKRVSYKQDFDSRRYYQQHDADYHEEN
                  ********************* **************************************
  
  COL             MTN
  N315            MTN
  NCTC8325        MTN
  Newman          MTN
  USA300_FPR3757  MTN
                  ***