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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL2408 [new locus tag: SACOL_RS12635 ]
  • pan locus tag?: SAUPAN005944000
  • symbol: SACOL2408
  • pan gene symbol?: —
  • synonym:
  • product: lipoprotein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL2408 [new locus tag: SACOL_RS12635 ]
  • symbol: SACOL2408
  • product: lipoprotein
  • replicon: chromosome
  • strand: -
  • coordinates: 2467924..2468295
  • length: 372
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    GTGGGAGCATTGAAGCGATTTGTGGCGACGGTATTATTATTACTAGTCTTTATATCAGGA
    TGTGGTAATGATAAATATGTGAAAGAAATAGATGAAGCAGTTAAAATTCAAAATCAAAAA
    CAAGAACAACTTGCCAAAAAAGGCAACGGTGATCGTGTTGATCATTTTGAACGCAAAGAT
    GCTAATATTTATGTCTATGATAAGGATAAAATTATCATTTTAGCTTATAAACCTTTGAGT
    AATGATGATGAAGTGCATTATTATGCATATGATTTTAGTGATAAACGTGTATCATATAAG
    CAAGATTTTGATTCGAGACGATATTATCAACAACATGATGCGGATTATCATGAAGAAAAT
    ATGACGAACTAG
    60
    120
    180
    240
    300
    360
    372

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL2408 [new locus tag: SACOL_RS12635 ]
  • symbol: SACOL2408
  • description: lipoprotein
  • length: 123
  • theoretical pI: 6.10833
  • theoretical MW: 14570.2
  • GRAVY: -0.856911

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • FIG01108076: hypothetical protein
  • PFAM:
    NTF2 (CL0051) DUF4467; Domain of unknown function with cystatin-like fold (DUF4467) (PF14729; HMM-score: 130.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 9.87
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helices: 0
  • LocateP: Lipid anchored
    • Prediction by SwissProt Classification: Extracellular
    • Pathway Prediction: Sec-(SPII)
    • Intracellular possibility: 0
    • Signal peptide possibility: 0.5
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: VFISGCG
  • SignalP: Signal peptide LIPO(Sec/SPII) length 20 aa
    • SP(Sec/SPI): 0.000355
    • TAT(Tat/SPI): 0.000035
    • LIPO(Sec/SPII): 0.999454
    • Cleavage Site: CS pos: 20-21. ISG-CG. Pr: 0.9999
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MGALKRFVATVLLLLVFISGCGNDKYVKEIDEAVKIQNQKQEQLAKKGNGDRVDHFERKDANIYVYDKDKIIILAYKPLSNDDEVHYYAYDFSDKRVSYKQDFDSRRYYQQHDADYHEENMTN

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: Lipoprotein [1]
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
    The Staphylococcus aureus proteome.
    Int J Med Microbiol: 2014, 304(2);110-20
    [PubMed:24439828] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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