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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS12635 [old locus tag: SACOL2408 ]
  • pan locus tag?: SAUPAN005944000
  • symbol: SACOL_RS12635
  • pan gene symbol?: —
  • synonym:
  • product: cystatin-like fold lipoprotein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS12635 [old locus tag: SACOL2408 ]
  • symbol: SACOL_RS12635
  • product: cystatin-like fold lipoprotein
  • replicon: chromosome
  • strand: -
  • coordinates: 2467924..2468286
  • length: 363
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (2467924..2468286) NCBI
  • BioCyc: SACOL_RS12635 BioCyc
  • MicrobesOnline: see SACOL2408

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    TTGAAGCGATTTGTGGCGACGGTATTATTATTACTAGTCTTTATATCAGGATGTGGTAAT
    GATAAATATGTGAAAGAAATAGATGAAGCAGTTAAAATTCAAAATCAAAAACAAGAACAA
    CTTGCCAAAAAAGGCAACGGTGATCGTGTTGATCATTTTGAACGCAAAGATGCTAATATT
    TATGTCTATGATAAGGATAAAATTATCATTTTAGCTTATAAACCTTTGAGTAATGATGAT
    GAAGTGCATTATTATGCATATGATTTTAGTGATAAACGTGTATCATATAAGCAAGATTTT
    GATTCGAGACGATATTATCAACAACATGATGCGGATTATCATGAAGAAAATATGACGAAC
    TAG
    60
    120
    180
    240
    300
    360
    363

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS12635 [old locus tag: SACOL2408 ]
  • symbol: SACOL_RS12635
  • description: cystatin-like fold lipoprotein
  • length: 120
  • theoretical pI: 6.10833
  • theoretical MW: 14328.9
  • GRAVY: -0.921667

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SACOL2408
  • PFAM:
    NTF2 (CL0051) DUF4467; Domain of unknown function with cystatin-like fold (DUF4467) (PF14729; HMM-score: 130.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 9.87
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helices: 0
  • LocateP:
  • SignalP: Signal peptide LIPO(Sec/SPII) length 17 aa
    • SP(Sec/SPI): 0.000417
    • TAT(Tat/SPI): 0.000084
    • LIPO(Sec/SPII): 0.999126
    • Cleavage Site: CS pos: 17-18. ISG-CG. Pr: 0.9999
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKRFVATVLLLLVFISGCGNDKYVKEIDEAVKIQNQKQEQLAKKGNGDRVDHFERKDANIYVYDKDKIIILAYKPLSNDDEVHYYAYDFSDKRVSYKQDFDSRRYYQQHDADYHEENMTN

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: see SACOL2408
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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