PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN006024000
• symbol^?: cntD
• synonym:
• description^?: ABC transporter ATP-binding protein

  descriptions from strain specific annotations:

  • ABC transporter ATP-binding protein
  • peptide ABC transporter ATP-binding protein
  • oligopeptide ABC transporter, ATPase domain, putative
  • oligopeptide ABC transporter ATP-binding protein
  • oligopeptide transporter ATPase
  • Oligopeptide transporter putative ATPase domain protein
  • ABC transporter
  • ABC transporter family protein
  • dipeptide transport ATP-binding protein DppD
  • nickel transport ATP-binding protein
  • oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein
  • oligopeptide ABC transporter ATP-binding protein Opp-1D
  • oligopeptide transport ATP-binding protein oppD. domain protein
  • oligopeptide transporter ATPase domain-containing protein
  • oligopeptide transporter ATPase subunit
  • oligopeptide transporter putative ATPase domain
• strand^?: -
• coordinates^?: 6080576..6081391
• synteny block^?: BlockID0047680
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2473
N315:
SA2252 (opp-1D)
NCTC8325:
SAOUHSC_02764
Newman:
NWMN_2361 (opp1D)
USA300_FPR3757:
SAUSA300_2408
04-02981:
SA2981_2401 (opp-1D)
08BA02176:
C248_2514 (opp-1D)
11819-97:
MS7_2477
6850:
RSAU_002302 (opp1D)
71193:
ST398NM01_2514
ECT-R 2:
ECTR2_2321
ED133:
SAOV_2514c
ED98:
SAAV_2530
HO 5096 0412:
SAEMRSA15_23620 (opp-1D)
JH1:
SaurJH1_2540
JH9:
SaurJH9_2491
JKD6008:
SAA6008_02505 (opp-1D)
JKD6159:
SAA6159_02361 (opp-1D)
LGA251:
SARLGA251_22440 (opp-1D)
M013:
M013TW_2424
MRSA252:
SAR2551 (opp-1D)
MSHR1132:
SAMSHR1132_22890
MSSA476:
SAS2355
Mu3:
SAHV_2448
Mu50:
SAV2464
MW2:
MW2388 (opp-1D)
RF122:
SAB2347c (opp1D)
ST398:
SAPIG2514
T0131:
SAT0131_02663
TCH60:
HMPREF0772_10725 (opp-1D)
TW20:
SATW20_25920 (opp-1D)
USA300_TCH1516:
USA300HOU_2455
VC40:
SAVC_11190

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MTLLTVKHLTITDTWTDQPLVSDVNFTLTKGETLGVIGESGSGKSITCKSIIGLNPERLG
  N315            MTLLTVKHLTITDTWTDQPLVSDVNFTLTKGETLGVIGESGSGKSITCKSIIGLNPERLG
  NCTC8325        MTLLTVKHLTITDTWTDQPLVSDVNFTLTKGETLGVIGESGSGKSITCKSIIGLNPERLG
  Newman          MTLLTVKHLTITDTWTDQPLVSDVNFTLTKGETLGVIGESGSGKSITCKSIIGLNPERLG
  USA300_FPR3757  MTLLTVKHLTITDTWTDQPLVSDVNFTLTKGETLGVIGESGSGKSITCKSIIGLNPERLG
                  ************************************************************
  
  COL             VTGEIIFDGTSMLSLSESQLKKYRGKDIAMVMQQGSRAFDPSTTVGKQMFETMKVHTSMS
  N315            VTGEIIFDGTSMLSLSESQRKKYRGKDIAMVMQQGSRAFDPSTTVGKQMFETMKVHTSMS
  NCTC8325        VTGEIIFDGTSMLSLSESQLKKYRGKDIAMVMQQGSRAFDPSTTVGKQMFETMKVHTSMS
  Newman          VTGEIIFDGTSMLSLSESQLKKYRGKDIAMVMQQGSRAFDPSTTVGKQMFETMKVHTSMS
  USA300_FPR3757  VTGEIIFDGTSMLSLSESQLKKYRGKDIAMVMQQGSRAFDPSTTVGKQMFETMKVHTSMS
                  ******************* ****************************************
  
  COL             TQEIEKTLIEYMDYLSLKDPKRILKSYPYMLSGGMLQRLMIALALALKPKLIIADEPTTA
  N315            TQEIEKTLIEYMDYLSLKDPKRILKSYPYMLSGGMLQRLMIALALALKPKLIIADEPTTA
  NCTC8325        TQEIEKTLIEYMDYLSLKDPKRILKSYPYMLSGGMLQRLMIALALALKPKLIIADEPTTA
  Newman          TQEIEKTLIEYMDYLSLKDPKRILKSYPYMLSGGMLQRLMIALALALKPKLIIADEPTTA
  USA300_FPR3757  TQEIEKTLIEYMDYLSLKDPKRILKSYPYMLSGGMLQRLMIALALALKPKLIIADEPTTA
                  ************************************************************
  
  COL             LDTITQYDVLEAFIDIKKHFDCAMIFISHDLTVINKIADRVVVMKNGQLIEQGTRESVLH
  N315            LDTITQYDVLEAFIDIKKHFDCAMIFISHDLTVINKIADRVVVMKNGQLIEHGTRESVLH
  NCTC8325        LDTITQYDVLEAFIDIKKHFDCAMIFISHDLTVINKIADRVVVMKNGQLIEQGTRESVLH
  Newman          LDTITQYDVLEAFIDIKKHFDCAMIFISHDLTVINKIADRVVVMKNGQLIEQGTRESVLH
  USA300_FPR3757  LDTITQYDVLEAFIDIKKHFDCAMIFISHDLTVINKIADRVVVMKNGQLIEQGTRESVLH
                  ***************************************************:********
  
  COL             HPEHVYTKYLLSTKKKINDHFKHVMRGDVHD
  N315            HPEHVYTKYLLSTKKKINDHFKHVMRGDVHD
  NCTC8325        HPEHVYTKYLLSTKKKINDHFKHVMRGDVHD
  Newman          HPEHVYTKYLLSTKKKINDHFKHVMRGDVHD
  USA300_FPR3757  HPEHVYTKYLLSTKKKINDHFKHVMRGDVHD
                  *******************************