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⊟Summary[edit | edit source]
- pan ID?: SAUPAN006035000
- symbol?: —
- synonym:
- description?: short chain dehydrogenase
- short chain dehydrogenase
- glucose 1-dehydrogenase-like protein
- SDR family oxidoreductase
- short chain dehydrogenase, putative
- Glutamate dehydrogenase
- putative short-chain dehydrogenase
- 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase)
- 3-oxoacyl-ACP reductase
- pseudogene
- short chain dehydrogenase family protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 6090804..6091448
- synteny block?: BlockID0047790
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2409
08BA02176:
C248_2522
11819-97:
MS7_2485
6850:
RSAU_002310
71193:
ST398NM01_2522
ECT-R 2:
ECTR2_2329
ED133:
SAOV_2522c
ED98:
SAAV_2538
HO 5096 0412:
SAEMRSA15_23700
JH1:
SaurJH1_2549
JH9:
SaurJH9_2499
JKD6008:
SAA6008_02513
JKD6159:
SAA6159_02369
LGA251:
SARLGA251_22520
M013:
M013TW_2432
MRSA252:
SAR2559
MSHR1132:
SAMSHR1132_22970
MSSA476:
SAS2363
Mu3:
SAHV_2456
Mu50:
SAV2472
MW2:
MW2396
RF122:
SAB2355c
ST398:
SAPIG2522
T0131:
SAT0131_02671 (codY)
TCH60:
HMPREF0772_10717 (fabG)
TW20:
SATW20_26000
USA300_TCH1516:
USA300HOU_2463
VC40:
SAVC_11230
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
N315 MKRLENKVAVVTGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGDNAKAYN
NCTC8325 ---------------------------------MAVDIAEAVSETVDKIKSNGDNAKAYN
Newman ------------------------------------------------------------
USA300_FPR3757 ---------------------------------MAVDIAEAVSETVDKIKSNGDNAKAYN
N315 VDISDEQQVVDFVSDIKEQFGRIDVLFNNAGVDNAAGRIHEYPIDVYDKIMNVDMRGTIL
NCTC8325 VDNASEQQVVDFVSDIKEQFGRIDVLFNNAGVDNAADRIHEYPIDVYDKIMNVDMRGTFL
Newman MDNASEQQVVDFVSDIKEQFGRIDVLFNNAGVDNAADRIHEYPIDVYDKIMNVDMRGTFL
USA300_FPR3757 VDNASEQQVVDFVSDIKEQFGRIDVLFNNAGVDNAADRIHEYPIDVYDKIMNVDMRGTFL
:* :.*******************************.*********************:*
N315 MTKMMLPLMMNQGGSIVNTSSFSGQAEDLYRSGYNAAKGAVINFTKSIAIEYGRDGIRSN
NCTC8325 MTKMMLPLMMNQGGSIVNTSSFSGQAADLYRSGYNAAKGAVINFTKSIAIEYGRDSIRAN
Newman MTKMMLPLMMNQGGSIVNTSSFSGQAADLYRSGYNAAKGAVINFTKSIAIEYGRDSIRAN
USA300_FPR3757 MTKMMLPLMMNQGGSIVNTSSFSGQAADLYRSGYNAAKGAVINFTKSIAIEYGRDSIRAN
************************** ****************************.**:*
N315 AIAPGTIETPLVDKLTGTSEDDAGKTFRENQKWMTPLGRLGKPEEVAKLVVFLASDDSSF
NCTC8325 AIAPGTIETPLVDKLTGTSEDDAGKTFRENQKWMTPLGRLGKPEEVAKLVVFLASDDSSF
Newman AIAPGTIETPLVDKLTGTSEDDAGKTFRENQKWMTPLGRLGKPEEVAKLVVFLASDDSSF
USA300_FPR3757 AIAPGTIETPLVDKLTGTSEDDAGKTFRENQKWMTPLGRLGKPEEVAKLVVFLASDDSSF
************************************************************
N315 ITGETIRIDGGVMAYTWPGEMLSDDSWKRTLE
NCTC8325 ITGETIRIDGGVMAYTWPGEMLSDDSWKRTLE
Newman ITGETIRIDGGVMAYTWPGEMLSDDSWKRTLE
USA300_FPR3757 ITGETIRIDGGVMAYTWPGEMLSDDSWKRTLE
********************************