PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN006149000
• symbol^?: —
• synonym:
• description^?: MarR family transcriptional regulator

  descriptions from strain specific annotations:

  • MarR family transcriptional regulator
  • transcriptional regulator MarR family protein
  • iron dependent repressor, N-terminal DNA binding domain protein
  • MarR family regulatory protein
  • pseudogene
  • transcriptional regulator, MarR family
• strand^?: -
• coordinates^?: 6221313..6221828
• synteny block^?: BlockID0048790
• occurrence^?: in 55% of 33 strains

⊟Orthologs

COL:
SACOL2524
N315:
—
NCTC8325:
SAOUHSC_02819
Newman:
NWMN_2411
USA300_FPR3757:
SAUSA300_2452
04-02981:
—
08BA02176:
C248_2569 (yvnA)
11819-97:
MS7_2518
6850:
—
71193:
ST398NM01_2565
ECT-R 2:
—
ED133:
SAOV_2557c
ED98:
—
HO 5096 0412:
SAEMRSA15_24110
JH1:
—
JH9:
—
JKD6008:
SAA6008_02550
JKD6159:
SAA6159_02409
LGA251:
SARLGA251_22880
M013:
—
MRSA252:
—
MSHR1132:
SAMSHR1132_23340
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
SAPIG2565
T0131:
SAT0131_02715
TCH60:
—
TW20:
SATW20_26340
USA300_TCH1516:
USA300HOU_2502
VC40:
SAVC_11440

⊟Genome Viewer

COL
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MDMKREVILKLQQFIIERENADKRRQYKKENEELDLSLTQFHIIELIDNNDKVNNKFLSE
  NCTC8325        --MKREVILKLQQFIIERENADKRRQYKKENEELDLSLTQFHIIELIDNNDKVNNKFLSE
  Newman          --MKREVILKLQQFIIERENADKRRQYKKENEELDLSLTQFHIIELIDNNDKVNNKFLSE
  USA300_FPR3757  MDMKREVILKLQQFIIERENADKRRQYKKENEELDLSLTQFHIIELIDNNDKVNNKFLSE
                    **********************************************************
  
  COL             MLNVSKPAITKSIKKLLAKDLVVESHNEFNKREVNYSLTQKGKKLSYIHDELHEKSVKKY
  NCTC8325        MLNVSKPAITKSIKKLLAKDLVVESHNEFNKREVNYSLTQKGKKLSYIHDELHEKSVKKY
  Newman          MLNVSKPAITKSIKKLLAKDLVVESHNEFNKREVNYSLTQKGKKLSYIHDELHEKSVKKY
  USA300_FPR3757  MLNVSKPAITKSIKKLLAKDLVVESHNEFNKREVNYSLTQKGKKLSYIHDELHEKSVKKY
                  ************************************************************
  
  COL             EEVLKVFDDDEMAVIIEFLNRSIEELKKEDGLND
  NCTC8325        EEVLKVFDDDEMAVIIEFLNRSIEELKKEDGLND
  Newman          EEVLKVFDDDEMAVIIEFLNRSIEELKKEDGLND
  USA300_FPR3757  EEVLKVFDDDEMAVIIEFLNRSIEELKKEDGLND
                  **********************************