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⊟Summary[edit | edit source]
- pan ID?: SAUPAN006199000
- symbol?: cidR
- synonym:
- description?: LysR family transcriptional regulator
- LysR family transcriptional regulator
- CidR-like transcriptional regulator, putative
- transcriptional regulator LysR family protein
- bacterial regulatory helix-turn-helix , lysR family protein
- LysR-family regulatory protein
- LysR family regulatory protein CidR
- LysR substrate-binding
- regulatory helix-turn-helix protein, lysR family protein
- transcriptional regulator
- transcriptional regulator LysR family
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 6261694..6262521
- synteny block?: BlockID0049230
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2478 (cidR)
08BA02176:
C248_2599
11819-97:
MS7_2547
6850:
RSAU_002383
71193:
ST398NM01_2592
ECT-R 2:
ECTR2_2394
ED133:
SAOV_2586c
ED98:
SAAV_2608
HO 5096 0412:
SAEMRSA15_24450
JH1:
SaurJH1_2618
JH9:
SaurJH9_2565
JKD6008:
SAA6008_02579
JKD6159:
SAA6159_02438
LGA251:
SARLGA251_23170 (cidR)
M013:
M013TW_2514
MRSA252:
SAR2622
MSHR1132:
SAMSHR1132_23620
MSSA476:
SAS2428
Mu3:
SAHV_2526
Mu50:
SAV2542
MW2:
MW2463
RF122:
SAB2416c
ST398:
SAPIG2592
T0131:
SAT0131_02748 (glpK)
TCH60:
HMPREF0772_10649
TW20:
SATW20_26630 (cidR)
USA300_TCH1516:
USA300HOU_2534
VC40:
SAVC_11585
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL -MLVDIKHMKYFIEVVKQGGMTNASKSLYIAQPTISKAIKDIENEMGTPLFDRSKRHLIL
N315 MMLVDIKHMKYFIEVVKQGGMTNASKSLYIAQPTISKAIKDIENEMGTPLFDRSKRHLIL
NCTC8325 --------------------MTNASKSLYIAQPTISKAIKDIENEMGTPLFDRSKRHLIL
Newman MMLVDIKHMKYFIEVVKQGGMTNASKSLYIAQPTISKAIKDIENEMGTPLFDRSKRHLIL
USA300_FPR3757 MMLVDIKHMKYFIEVVKQGGMTNASKSLYIAQPTISKAIKDIENEMGTPLFDRSKRHLIL
****************************************
COL TDAGQIFYEKSKEIVALYDYLPSEMERLNGLETGHINMGMSAVMNMKILINILGAFHQQY
N315 TDAGQIFYEKSKEIVALYDYLPSEMERLNGLETGHINMGMSAVMNMKILINILGAFHQQY
NCTC8325 TDAGQIFYEKSKEIVALYDYLPSEMERLNGLETGHINMGMSAVMNMKILINILGAFHQQY
Newman TDAGQIFYEKSKEIVALYDYLPSEMERLNGLETGHINMGMSAVMNMKILINILGAFHQQY
USA300_FPR3757 TDAGQIFYEKSKEIVALYDYLPSEMERLNGLETGHINMGMSAVMNMKILINILGAFHQQY
************************************************************
COL PNVTYNLIENGGKTIEQQIINDEVDIGVTTLPVDHHIFDYTTLDKEDLRLIVSREHRLAK
N315 PNVTYNLIENGGKTIEQQIINDEVDIGVTTLPVDHHIFDYTTLDKEDLRLIVSREHRLAK
NCTC8325 PNVTYNLIENGGKTIEQQIINDEVDIGVTTLPVDHHIFDYTTLDKEDLRLIVSREHRLAK
Newman PNVTYNLIENGGKTIEQQIINDEVDIGVTTLPVDHHIFDYTTLDKEDLRLIVSREHRLAK
USA300_FPR3757 PNVTYNLIENGGKTIEQQIINDEVDIGVTTLPVDHHIFDYTTLDKEDLRLIVSREHRLAK
************************************************************
COL YETVKLEDLAGEDFILFNKDFYLNDKIIENAKNVGFVPNTVAQISQWHVIEDLVTNELGI
N315 YETVKLEDLAGEDFILFNKDFYLNDKIIENAKNVGFVPNTVAQISQWHVIEDLVTNELGI
NCTC8325 YETVKLEDLAGEDFILFNKDFYLNDKIIENAKNVGFVPNTVAQISQWHVIEDLVTNELGI
Newman YETVKLEDLAGEDFILFNKDFYLNDKIIENAKNVGFVPNTVAQISQWHVIEDLVTNELGI
USA300_FPR3757 YETVKLEDLAGEDFILFNKDFYLNDKIIENAKNVGFVPNTVAQISQWHVIEDLVTNELGI
************************************************************
COL SILPTSISEQLNGDVKLLRIEDAHVHWELGVVWKKDKQLSHATTKWIEFLKDRLG
N315 SILPTSISEQLNGDVKLLRIEDAHVHWELGVVWKKDKQLSHATTKWIEFLKDRLG
NCTC8325 SILPTSISEQLNGDVKLLRIEDAHVHWELGVVWKKDKQLSHATTKWIEFLKDRLG
Newman SILPTSISEQLNGDVKLLRIEDAHVHWELGVVWKKDKQLSHATTKWIEFLKDRLG
USA300_FPR3757 SILPTSISEQLNGDVKLLRIEDAHVHWELGVVWKKDKQLSHATTKWIEFLKDRLG
*******************************************************