Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN006226000
- symbol?: crtM
- synonym:
- description?: dehydrosqualene synthase
- dehydrosqualene synthase
- squalene desaturase
- phytoene/squalene synthase family protein
- squalene/phytoene synthase
- squalene synthase
- dehydrosqualene synthase (Diapophytoene synthase) (4,4'-diapophytoene synthase) (DAP synthase)
- pseudogene
- squalene/phytoene synthase family protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 6289987..6290850
- synteny block?: BlockID0049500
- occurrence?: in 97% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2499 (crtM)
08BA02176:
C248_2620 (crtM)
11819-97:
MS7_2569 (crtM)
6850:
RSAU_002403 (crtM)
71193:
ST398NM01_2613
ECT-R 2:
ECTR2_2415
ED133:
SAOV_2607c
ED98:
SAAV_2628 (crtM)
HO 5096 0412:
SAEMRSA15_24650 (crtM)
JH1:
SaurJH1_2638
JH9:
SaurJH9_2584
JKD6008:
SAA6008_02601
JKD6159:
SAA6159_02458
LGA251:
SARLGA251_23370 (crtM)
M013:
M013TW_2536
MRSA252:
SAR2643 (crtM)
MSHR1132:
—
MSSA476:
SAS2448
Mu3:
SAHV_2546 (crtM)
Mu50:
SAV2562 (crtM)
MW2:
MW2483 (crtM)
RF122:
SAB2435c (crtM)
ST398:
SAPIG2613
T0131:
SAT0131_02773
TCH60:
HMPREF0772_10627 (crtM)
TW20:
SATW20_26840 (crtM)
USA300_TCH1516:
USA300HOU_2557 (crtM)
VC40:
SAVC_11690
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MTMMDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFL
N315 MTMMDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFL
NCTC8325 MTMMDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFL
Newman MTMMDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFL
USA300_FPR3757 MTMMDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFL
************************************************************
COL NQIKEDIQSIEKYPYEHHHFQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMF
N315 NQIKEDIQSIEKYPYEHHHFQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMF
NCTC8325 NQIKEDIQSIEKYPYEHHHFQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMF
Newman NQIKEDIQSIEKYPYEHHHFQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMF
USA300_FPR3757 NQIKEDIQSIEKYPYEHHHFQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMF
************************************************************
COL ETDAELFGYCYGVAGTVGEVLTPILSDHETHQTYDVARRLGESLQLINILRDVGEDFDNE
N315 ETDAELFGYCYGVAGTVGEVLTPILSDHETHQTYDVARRLGESLQLINILRDVGEDFDNE
NCTC8325 ETDAELFGYCYGVAGTVGEVLTPILSDHETHQTYDVARRLGESLQLINILRDVGEDFDNE
Newman ETDAELFGYCYGVAGTVGEVLTPILSDHETHQTYDVARRLGESLQLINILRDVGEDFDNE
USA300_FPR3757 ETDAELFGYCYGVAGTVGEVLTPILSDHETHQTYDVARRLGESLQLINILRDVGEDFDNE
************************************************************
COL RIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFQDVMDQIKVFSIEAQPI
N315 RVYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFQDVMDQIKVFSIEAQPI
NCTC8325 RIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFQDVMDQIKVFSIEAQPI
Newman RIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFQDVMDQIKVFSIEAQPI
USA300_FPR3757 RIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFQDVMDQIKVFSIEAQPI
*:**********************************************************
COL IELAARIYIEILDEVRQANYTLHERVFVDKRKKAKLFHEINSKYHRI
N315 IELAARIYIEILDEVRQANYTLHERVFVDKRKKAKLFHEINSKYHRI
NCTC8325 IELAARIYIEILDEVRQANYTLHERVFVDKRKKAKLFHEINSKYHRI
Newman IELAARIYIEILDEVRQANYTLHERVFVDKRKKAKLFHEINSKYHRI
USA300_FPR3757 IELAARIYIEILDEVRQANYTLHERVFVDKRKKAKLFHEINSKYHRI
***********************************************