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⊟Summary[edit | edit source]
- pan ID?: SAUPAN006266000
- symbol?: —
- synonym:
- description?: TIGR04197 family type VII secretion effector
- strand?: -
- coordinates?: 6318888..6319163
- synteny block?: BlockID0049890
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2525
08BA02176:
C248_2647
11819-97:
MS7_2593
6850:
RSAU_002428
71193:
ST398NM01_2637
ECT-R 2:
ECTR2_2441
ED133:
SAOV_2632c
ED98:
SAAV_2653
HO 5096 0412:
SAEMRSA15_24900
JH1:
SaurJH1_2663
JH9:
SaurJH9_2609
JKD6008:
SAA6008_02646
JKD6159:
SAA6159_02484
LGA251:
SARLGA251_23610
M013:
M013TW_2561
MRSA252:
SAR2667
MSHR1132:
SAMSHR1132_24020
MSSA476:
SAS2473
Mu3:
SAHV_2571
Mu50:
SAV2587
MW2:
MW2507
RF122:
SAB2462c
ST398:
SAPIG2637
T0131:
SAT0131_02821
TCH60:
HMPREF0772_10604
TW20:
SATW20_27280
USA300_TCH1516:
USA300HOU_2581
VC40:
SAVC_11815
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MMSTVQSDIFKTNSASSSIKSAVETCNNVSKPDKDESTTVSGNNNAHSVIDDLMSKNQSV
N315 -MSTVQSDIFKTNSASSSIKSAVETCNNVSKPDKDESTTVSGNNNAHSVIDDLISKNQSV
NCTC8325 MMSTVQSDIFKTNSASSSIKSAVETCNNVSKPDKDESTTVSGNNNAHSVIDDLMSKNQSV
Newman MMSTVQSDIFKTNSASSSIKSAVETCNNVSKPDKDESTTVSGNNNAHSVIDDLMSKNQSV
USA300_FPR3757 MMSTVQSDIFKTNSASSSIKSAVETCNNVSKPDKDESTTVSGNNNAHSVIDDLMSKNQSV
****************************************************:******
COL AEAIRTASDNIQKVGEAFDQTDVMIGNEIGKN
N315 AEAIRNASDSIQKVGEEFNQTDVMIGNEIGKN
NCTC8325 AEAIRTASDNIQKVGEAFDQTDVMIGNEIGKN
Newman AEAIRTASDNIQKVGEAFDQTDVMIGNEIGKN
USA300_FPR3757 AEAIRTASDNIQKVGEAFDQTDVMIGNEIGKN
*****.***.****** *:*************