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⊟Summary[edit | edit source]
- pan ID?: SAUPAN006314000
- symbol?: betB
- synonym:
- description?: betaine aldehyde dehydrogenase
- betaine aldehyde dehydrogenase
- glycine betaine aldehyde dehydrogenase
- glycine betaine aldehyde dehydrogenase gbsA
- putative betaine aldehyde dehydrogenase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 6358641..6360131
- synteny block?: BlockID0050300
- occurrence?: in 97% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2551 (gbsA)
08BA02176:
C248_2672 (cudA)
11819-97:
MS7_2617 (betB)
6850:
RSAU_002453 (gbsA)
71193:
ST398NM01_2660
ECT-R 2:
ECTR2_2466 (betB)
ED133:
SAOV_2658c
ED98:
—
HO 5096 0412:
SAEMRSA15_25170 (cudA)
JH1:
SaurJH1_2689
JH9:
SaurJH9_2635
JKD6008:
SAA6008_02670 (gbsA)
JKD6159:
SAA6159_02509 (gbsA)
LGA251:
SARLGA251_23850 (cudA)
M013:
M013TW_2590
MRSA252:
SAR2691 (cudA)
MSHR1132:
SAMSHR1132_24280
MSSA476:
SAS2498
Mu3:
SAHV_2597 (gbsA)
Mu50:
SAV2613 (gbsA)
MW2:
MW2532 (gbsA)
RF122:
SAB2487c (cudA)
ST398:
SAPIG2660 (betB)
T0131:
SAT0131_02846
TCH60:
HMPREF0772_10578 (betB)
TW20:
SATW20_27510 (cudA)
USA300_TCH1516:
USA300HOU_2606 (betB)
VC40:
SAVC_11925
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MELLKHLSQRQYIDGEWVESANKNTRDIINPYNQEVIFTVSEGTKEDAERAILAARRAFE
N315 MELLKHLSQRQYIDGEWVESTNKNTRDIINPYNQEVIFTVSEGTKEDAERAILAARRAFE
NCTC8325 MELLKHLSQRQYIDGEWVESANKNTRDIINPYNQEVIFTVSEGTKEDAERAILAARRAFE
Newman MELLKHLSQRQYIDGEWVESANKNTRDIINPYNQEVIFTVSEGTKEDAERAILAARRAFE
USA300_FPR3757 MELLKHLSQRQYIDGEWVESANKNTRDIINPYNQEVIFTVSEGTKEDAERAILAARRAFE
********************:***************************************
COL SGEWSQETAETRGKKVRAIADKIKEHREALARLETLDTGKTLEESYADMDDIHNVFMYFA
N315 SGEWSQETAEKRGKKVRAIADKIKEHREALARLETLDTGKTLEESYADMDDIHNVFMYFA
NCTC8325 SGEWSQETAETRGKKVRAIADKIKEHREALARLETLDTGKTLEESYADMDDIHNVFMYFA
Newman SGEWSQETAETRGKKVRAIADKIKEHREALARLETLDTGKTLEESYADMDDIHNVFMYFA
USA300_FPR3757 SGEWSQETAETRGKKVRAIADKIKEHREALARLETLDTGKTLEESYADMDDIHNVFMYFA
**********.*************************************************
COL GLADKDGGEMIDSPIPDTESKIVKEPVGVVTQITPWNYPLLQASWKIAPALATGCSLVMK
N315 GLADKDGGEMIDSPIPDTESKIVKEPVGVVTQITPWNYPLLQASWKIAPALATGCSLVMK
NCTC8325 GLADKDGGEMIDSPIPDTESKIVKEPVGVVTQITPWNYPLLQASWKIAPALATGCSLVMK
Newman GLADKDGGEMIDSPIPDTESKIVKEPVGVVTQITPWNYPLLQASWKIAPALATGCSLVMK
USA300_FPR3757 GLADKDGGEMIDSPIPDTESKIVKEPVGVVTQITPWNYPLLQASWKIAPALATGCSLVMK
************************************************************
COL PSEITPLTTIRVFELMEEVGFPKGTINLILGAGSEVGDVMSGHKEVDLVSFTGGIETGKH
N315 PSEITPLTTIRVFELMEEVGFPKGTINLILGAGSEVGDVMSGHKEVDLVSFTGGIETGKH
NCTC8325 PSEITPLTTIRVFELMEEVGFPKGTINLILGAGSEVGDVMSGHKEVDLVSFTGGIETGKH
Newman PSEITPLTTIRVFELMEEVGFPKGTINLILGAGSEVGDVMSGHKEVDLVSFTGGIETGKH
USA300_FPR3757 PSEITPLTTIRVFELMEEVGFPKGTINLILGAGSEVGDVMSGHKEVDLVSFTGGIETGKH
************************************************************
COL IMKNAANNVTNIALELGGKNPNIIFDDADFELAVDQALNGGYFHAGQVCSAGSRILVQNS
N315 IMKNAANNVTNIALELGGKNPNIIFDDADFELAVDQALNGGYFHAGQVCSAGSRILVQNS
NCTC8325 IMKNAANNVTNIALELGGKNPNIIFDDADFELAVDQALNGGYFHAGQVCSAGSRILVQNS
Newman IMKNAANNVTNIALELGGKNPNIIFDDADFELAVDQALNGGYFHAGQVCSAGSRILVQNS
USA300_FPR3757 IMKNAANNVTNIALELGGKNPNIIFDDADFELAVDQALNGGYFHAGQVCSAGSRILVQNS
************************************************************
COL IKDKFEQALIDRVKKIKLGNGFDADTEMGPVISTEHRNKIESYMDVAKAEGATIAVGGKR
N315 IKDKFEQALIDRVKKIKLGNGFDADTEMGPVISTEHRNKIESYMDVAKAEGATIAVGGKR
NCTC8325 IKDKFEQALIDRVKKIKLGNGFDADTEMGPVISTEHRNKIESYMDVAKAEGATIAVGGKR
Newman IKDKFEQALIDRVKKIKLGNGFDADTEMGPVISTEHRNKIESYMDVAKAEGATIAVGGKR
USA300_FPR3757 IKDKFEQALIDRVKKIKLGNGFDADTEMGPVISTEHRNKIESYMDVAKAEGATIAVGGKR
************************************************************
COL PDRDDLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTVEGFETEQEAIQLANDSIYGLAG
N315 PDRDDLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTVEGFETEQEAIQLANDSIYGLAG
NCTC8325 PDRDDLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTVEGFETEQEAIQLANDSIYGLAG
Newman PDRDDLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTVEGFETEQEAIQLANDSIYGLAG
USA300_FPR3757 PDRDDLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTVEGFETEQEAIQLANDSIYGLAG
************************************************************
COL AVFSKDIGKAQRVANKLKLGTVWINDFHPYFAQAPWGGYKQSGIGRELGKEGLEEYLVSK
N315 AVFSKDIGKAQRVANKLKLGTVWINDFHPYFAQAPWGGYKQSGIGRELGKEGLEEYLVSK
NCTC8325 AVFSKDIGKAQRVANKLKLGTVWINDFHPYFAQAPWGGYKQSGIGRELGKEGLEEYLVSK
Newman AVFSKDIGKAQRVANKLKLGTVWINDFHPYFAQAPWGGYKQSGIGRELGKEGLEEYLVSK
USA300_FPR3757 AVFSKDIGKAQRVANKLKLGTVWINDFHPYFAQAPWGGYKQSGIGRELGKEGLEEYLVSK
************************************************************
COL HILTNTNPQLVNWFSK
N315 HILTNTNPQLVNWFSK
NCTC8325 HILTNTNPQLVNWFSK
Newman HILTNTNPQLVNWFSK
USA300_FPR3757 HILTNTNPQLVNWFSK
****************