PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN006408000
• symbol^?: cap1B
• synonym:
• description^?: capsular polysaccharide biosynthesis protein Cap5B

  descriptions from strain specific annotations:

  • capsular polysaccharide biosynthesis protein Cap5B
  • capsular polysaccharide biosynthesis protein Cap1B
  • capsular polysaccharide biosynthesis protein CapB
  • capsular polysaccharide synthesis protein CapB
  • polysaccharide biosynthesis tyrosine autokinase
  • Tyrosine-protein kinase EpsD
  • capsular polysaccharide biosynthesis protein
  • capsule synthesis protein
  • exopolysaccharide tyrosine-protein kinase
  • non-specific protein-tyrosine kinase
  • putative capsule synthesis protein
  • putative tyrosine-protein kinase capB
  • Tyrosine-protein kinase (capsular polysaccharide biosynthesis)
  • tyrosine-protein kinase YwqD
• strand^?: -
• coordinates^?: 6458084..6458680
• synteny block^?: BlockID0051150
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2686 (cap1B)
N315:
SA2456
NCTC8325:
SAOUHSC_02999
Newman:
NWMN_2562 (capB)
USA300_FPR3757:
SAUSA300_2597 (cap1B)
04-02981:
SA2981_2602 (epsD)
08BA02176:
C248_2733
11819-97:
MS7_2668 (ywqD)
6850:
RSAU_002508 (capB2)
71193:
ST398NM01_2715
ECT-R 2:
ECTR2_2517
ED133:
SAOV_2715c
ED98:
SAAV_2735 (cap1B)
HO 5096 0412:
SAEMRSA15_25700
JH1:
SaurJH1_2744
JH9:
SaurJH9_2687
JKD6008:
SAA6008_02723 (cap1B)
JKD6159:
SAA6159_02559 (cap1B)
LGA251:
SARLGA251_24370
M013:
M013TW_2646
MRSA252:
SAR2744
MSHR1132:
SAMSHR1132_24910
MSSA476:
SAS2549
Mu3:
SAHV_2647
Mu50:
SAV2663
MW2:
MW2583 (capB)
RF122:
SAB2538c
ST398:
SAPIG2715
T0131:
SAT0131_02942 (murG)
TCH60:
HMPREF0772_10523 (capB)
TW20:
SATW20_28010
USA300_TCH1516:
USA300HOU_2663 (capB)
VC40:
SAVC_12195

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MTNTRRSTSSLIVHEQPKSPISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAA
  N315            MTNTRRSTSSLIVHEQPKSPISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAA
  NCTC8325        MTNTRRSTSSLIVHEQPKSPISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAA
  Newman          MTNTRRSTSSLIVHEQPKSPISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAA
  USA300_FPR3757  MTNTRRSTSSLIVHEQPKSPISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAA
                  ************************************************************
  
  COL             NLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIQDLD
  N315            NLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIQDLD
  NCTC8325        NLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIQDLD
  Newman          NLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIQDLD
  USA300_FPR3757  NLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIQDLD
                  ************************************************************
  
  COL             VLTSGPIPPNPSELITSRAFANLYDTLLMNYNFVIIDTPPVNTVTDAQLFSKFTGNVVYV
  N315            VLTSGPIPPNPSELITSRAFANLYDTLLMNYNFVIIDTPPVNTVTDAQLFSKFTGNVVYV
  NCTC8325        VLTSGPIPPNPSELITSRAFANLYDTLLMNYNFVIIDTPPVNTVTDAQLFSKFTGNVVYV
  Newman          VLTSGPIPPNPSELITSRAFANLYDTLLMNYNFVIIDTPPVNTVTDAQLFSKFTGNVVYV
  USA300_FPR3757  VLTSGPIPPNPSELITSRAFANLYDTLLMNYNFVIIDTPPVNTVTDAQLFSKFTGNVVYV
                  ************************************************************
  
  COL             VNSENNNRDEVKKGKELIEATGAKLLGVVLNRMPKDKSASYYAYYGTDES
  N315            VNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDKSASYYAYYGTDES
  NCTC8325        VNSENNNRDEVKKGKELIEATGAKLLGVVLNRMPKDKSASYYAYYGTDES
  Newman          VNSENNNRDEVKKGKELIEATGAKLLGVVLNRMPKDKSASYYAYYGTDES
  USA300_FPR3757  VNSENNNRDEVKKGKELIEATGAKLLGVVLNRMPKDKSASYYAYYGTDES
                  *******:******************************************