PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN006441000
• symbol^?: —
• synonym:
• description^?: DUF3816 family protein

  descriptions from strain specific annotations:

  • DUF3816 family protein
  • ECF-type riboflavin transporter S component domain protein
  • ECF-type riboflavin transporter substrate-binding protein
  • Substrate-specific component MtsA of methionine-regulated ECF transporter
  • membrane protein
• strand^?: -
• coordinates^?: 6482418..6482972
• synteny block^?: BlockID0051480
• occurrence^?: in 82% of 33 strains

⊟Orthologs

COL:
SACOL2709
N315:
SA2477
NCTC8325:
SAOUHSC_03020
Newman:
NWMN_2583
USA300_FPR3757:
SAUSA300_2618
04-02981:
SA2981_2625 (mtsA)
08BA02176:
—
11819-97:
MS7_2690
6850:
RSAU_002530
71193:
—
ECT-R 2:
ECTR2_2538
ED133:
—
ED98:
SAAV_2759
HO 5096 0412:
—
JH1:
SaurJH1_2766
JH9:
SaurJH9_2709
JKD6008:
SAA6008_02744
JKD6159:
SAA6159_02582
LGA251:
—
M013:
M013TW_2668
MRSA252:
SAR2767
MSHR1132:
SAMSHR1132_25130
MSSA476:
SAS2570
Mu3:
SAHV_2669
Mu50:
SAV2685
MW2:
MW2604
RF122:
SAB2561c
ST398:
—
T0131:
SAT0131_02964
TCH60:
HMPREF0772_10501
TW20:
SATW20_28220
USA300_TCH1516:
USA300HOU_2687
VC40:
SAVC_12300

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKKQDISVKTVVAIGIGAAVFVILGRFVVIPTGFPNTNIETSYAFLALISAIFGPFAGLM
  N315            MKKQDISVKTVVAIGIGAAVFVILGRFVVIPTGFPNTNIETSYAFLALISAIFGPFAGLM
  NCTC8325        MKKQDISVKTVVAIGIGAAVFVILGRFVVIPTGFPNTNIETSYAFLALISAIFGPFAGLM
  Newman          MKKQDISVKTVVAIGIGAAVFVILGRFVVIPTGFPNTNIETSYAFLALISAIFGPFAGLM
  USA300_FPR3757  MKKQDISVKTVVAIGIGAAVFVILGRFVVIPTGFPNTNIETSYAFLALISAIFGPFAGLM
                  ************************************************************
  
  COL             TGLVGHAIKDFTTYGSAWWSWVICSGIIGCLYGWIGLKLNLSSGRFSRKSMVYFNIGQII
  N315            TGLVGHAIKDFTTYGSAWWSWVICSGIIGCLYGWIGLKLNLSSGLFSRKSMIYFNIGQII
  NCTC8325        TGLVGHAIKDFTTYGSAWWSWVICSGIIGCLYGWIGLKLNLSSGRFSRKSMVYFNIGQII
  Newman          TGLVGHAIKDFTTYGSAWWSWVICSGIIGCLYGWIGLKLNLSSGRFSRKSMVYFNIGQII
  USA300_FPR3757  TGLVGHAIKDFTTYGSAWWSWVICSGIIGCLYGWIGLKLNLSSGRFSRKSMVYFNIGQII
                  ******************************************** ******:********
  
  COL             ANIICWALIAPTLDILIYNEPANKVYTQGVISAVLNIISVGIIGTILLKAYASSQIKKGS
  N315            ANIICWALIAPTLDILIYNEPANKVYTQGVISAVLNIISVGIIGTILLKAYASSQIKKGS
  NCTC8325        ANIICWALIAPTLDILIYNEPANKVYTQGVISAVLNIISVGIIGTILLKAYASSQIKKGS
  Newman          ANIICWALIAPTLDILIYNEPANKVYTQGVISAVLNIISVGIIGTILLKAYASSQIKKGS
  USA300_FPR3757  ANIICWALIAPTLDILIYNEPANKVYTQGVISAVLNIISVGIIGTILLKAYASSQIKKGS
                  ************************************************************
  
  COL             LRKE
  N315            LRKE
  NCTC8325        LRKE
  Newman          LRKE
  USA300_FPR3757  LRKE
                  ****