PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN006480000
• symbol^?: mbtS
• synonym:
• description^?: transcriptional regulator

  descriptions from strain specific annotations:

  • transcriptional regulator
  • helix-turn-helix domain-containing protein
  • helix-turn-helix transcriptional regulator
  • putative transcriptional regulator
  • transcriptional regulator, putative
  • Cro/CI family transcriptional regulator
  • helix-turn-helix family protein
  • transcriptional regulator, Cro/CI family
  • XRE family transcriptional regulator
• strand^?: -
• coordinates^?: 6516727..6517296
• synteny block^?: BlockID0051870
• occurrence^?: in 94% of 33 strains

⊟Orthologs

COL:
SACOL2732
N315:
SA2495
NCTC8325:
SAOUHSC_03046
Newman:
NWMN_2606
USA300_FPR3757:
SAUSA300_2640
04-02981:
SA2981_2644
08BA02176:
C248_2771
11819-97:
MS7_2710
6850:
RSAU_002554
71193:
ST398NM01_2751
ECT-R 2:
ECTR2_2557
ED133:
—
ED98:
SAAV_2777
HO 5096 0412:
SAEMRSA15_26030
JH1:
SaurJH1_2785
JH9:
SaurJH9_2728
JKD6008:
SAA6008_02767
JKD6159:
SAA6159_02599
LGA251:
SARLGA251_24700
M013:
M013TW_2692
MRSA252:
SAR2791
MSHR1132:
SAMSHR1132_25330
MSSA476:
SAS2588
Mu3:
SAHV_2689
Mu50:
SAV2705
MW2:
MW2624
RF122:
SAB2582c
ST398:
SAPIG2751
T0131:
SAT0131_02988
TCH60:
HMPREF0772_10477
TW20:
SATW20_28430
USA300_TCH1516:
—
VC40:
SAVC_12415

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDD
  N315            MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDD
  NCTC8325        MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDD
  Newman          MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDD
  USA300_FPR3757  MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDD
                  ************************************************************
  
  COL             LVKGTIPFVPDIKAQRSLNLWTYVMLIFMTLAAILMGPLVVYWNWTWGVTVAIILGIGFY
  N315            LVKGTIPFVPDIKVQRSLNLWTYVMLIFMTLAAILMGPLVVYWNWTWGITVAIILGIGFY
  NCTC8325        LVKGTIPFVPDIKAQRSLNLWTYVMLIFMTLAAILMGPLVVYWNWTWGVTVAIILGIGFY
  Newman          LVKGTIPFVPDIKAQRSLNLWTYVMLIFMTLAAILMGPLVVYWNWTWGVTVAIILGIGFY
  USA300_FPR3757  LVKGTIPFVPDIKAQRSLNLWTYVMLIFMTLAAILMGPLVVYWNWTWGVTVAIILGIGFY
                  *************.**********************************:***********
  
  COL             ASMKIEDLKKVHKMDNYDRIVAFMNGKDPSEVQTTKARNTMTNALSIISVIGILSLIIFL
  N315            ASMKIEDLKKVHKMDNYDRIVAFMNGKDPSEVQTTKARNTMTNALSIISAIGILSLIIFL
  NCTC8325        ASMKIEDLKKVHKMDNYDRIVAFMNGKDPSEVQTTKARNTMTNALSIISVIGILSLIIFL
  Newman          ASMKIEDLKKVHKMDNYDRIVAFMNGKDPSEVQTTKARNTMTNALSIISVIGILSLIIFL
  USA300_FPR3757  ASMKIEDLKKVHKMDNYDRIVAFMNGKDPSEVQTTKARNTMTNALSIISVIGILSLIIFL
                  *************************************************.**********
  
  COL             SVYLANKFL
  N315            SVYMANKFL
  NCTC8325        SVYLANKFL
  Newman          SVYLANKFL
  USA300_FPR3757  SVYLANKFL
                  ***:*****