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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_0800 [new locus tag: SAUSA300_RS04320 ]
- pan locus tag?: SAUPAN002842000
- symbol: sek
- pan gene symbol?: sek
- synonym:
- product: enterotoxin K
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_0800 [new locus tag: SAUSA300_RS04320 ]
- symbol: sek
- product: enterotoxin K
- replicon: chromosome
- strand: -
- coordinates: 883304..884032
- length: 729
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID: 3914034 NCBI
- RefSeq: YP_493500 NCBI
- BioCyc: see SAUSA300_RS04320
- MicrobesOnline: 1292315 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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721ATGAAAAAATTAATAGTTATCATATTAATAAATATAATAACTTTAAGTGTCTCTAATAGT
GCCAGCGCTCAAGGTGATATAGGAATTGATAATCTCAGGAATTTTTATACAAAAAAAGAC
TTTGTAGATTTAAAAGATGTAAAAGACAATGATACTCCTATAGCTAATCAACTACAATTT
TCAAATGTATCTTATGATTTAATTTCAGAATCAAAAGATTTTAATAAATTTAGTAATTTC
AAGGGAAAAAAACTTGATGTTTTTGGTATTAGTTATAATGGCCAGTGTAACAATAAATAC
ATATATGGTGGAGTCACAGCTACTAACGAATATCTAGATAAACCTAGAAATATCCCTATA
AATATATGGATCAATGGAAATCACAAAACTATTTCTACCAATAAAGTTTCGACAAATAAA
AAATTTGTTACCGCTCAAGAGATTGATGTCAAATTAAGAAAGTACCTTCAAGAAGAATAC
AACATTTATGGACATAACGGCACTAAAAAAGGAGAAGAATATGGTCATAAATCAAAATTT
TATTCTGGGTTTAATATTGGTAAAGTAACGTTCCATTTAAATAATAATGACACTTTTTCA
TATGATTTATTCTACACAGGAGATGATGGGTTACCAAAAAGTTTTTTAAAAATTTACGAA
GACAATAAAACTGTAGAGTCTGAGAAATTCCATTTGGATGTCGATATTTCTTATAAAGAA
ACGATATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_0800 [new locus tag: SAUSA300_RS04320 ]
- symbol: Sek
- description: enterotoxin K
- length: 242
- theoretical pI: 8.7193
- theoretical MW: 27750
- GRAVY: -0.592562
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED :
- Superantigen enterotoxin SEK
- PFAM: Ant-toxin_C (CL0386) Stap_Strp_tox_C; Staphylococcal/Streptococcal toxin, beta-grasp domain (PF02876; HMM-score: 119.7)and 1 moreOB_enterotoxin (CL0658) Stap_Strp_toxin; Staphylococcal/Streptococcal toxin, OB-fold domain (PF01123; HMM-score: 22.9)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Extracellular
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0
- Extracellular Score: 10
- Internal Helix: 1
- LocateP: Secretory(released) (with CS)
- Prediction by SwissProt Classification: Extracellular
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: -0.17
- Signal peptide possibility: 1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: NSASAQGD
- SignalP: Signal peptide SP(Sec/SPI) length 23 aa
- SP(Sec/SPI): 0.995536
- TAT(Tat/SPI): 0.000575
- LIPO(Sec/SPII): 0.002981
- Cleavage Site: CS pos: 23-24. ASA-QG. Pr: 0.8059
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKKLIVIILINIITLSVSNSASAQGDIGIDNLRNFYTKKDFVDLKDVKDNDTPIANQLQFSNVSYDLISESKDFNKFSNFKGKKLDVFGISYNGQCNNKYIYGGVTATNEYLDKPRNIPINIWINGNHKTISTNKVSTNKKFVTAQEIDVKLRKYLQEEYNIYGHNGTKKGEEYGHKSKFYSGFNIGKVTFHLNNNDTFSYDLFYTGDDGLPKSFLKIYEDNKTVESEKFHLDVDISYKETI
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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